EST details — SGN-E372538

Search information 
Request: 372538Match: SGN-E372538
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C179147Clone name: TUS-31-A1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C179147 is on microarray TOM1 spot ID 1-1-8.1.2.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C76493 [cLES-18-D17] Trace: SGN-T101729 EST: SGN-E289287 Direction: 5' Facility: TIGR
Clone: SGN-C179147 [TUS-31-A1] Trace: SGN-T1523 EST: SGN-E378397 Direction: 5' Facility: Giov. Lab
Clone: SGN-C179147 [TUS-31-A1] Trace: SGN-T185084 EST: SGN-E372627 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E372538Length: 658 bp (893 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E372538 [] (trimmed) ACGATAACAAACATTTGTATAAAATAATATTATGTGTGTTCAAAATCTGTAGATAGAAAGTCAAAATCATATACTTCCGATGCAAAATATGAAAA
GAAACATATCAATTATTCTTAAGAGGAACATTTGCTTCATGTAGTATGTTTTTGTTTCAGATCCGTATACTCTTCTCTTCTTTTATATCTCGGTA
GCTCGATAGTATGCTTGATGAGAGCTCAGTAGTTTTCTCTCGTCCATAAAAGAGTGCAAACCTGTTATGCAATAACCAATAGTCCAAAGATACTT
GGTAATTGGGAACAAATGAGATACACTGGATTTATCCAATAACTTGCCTGATCAGCCAAAATACACAACTTCAAACTCCATGCAACTCAAAATTT
CCTAAATAACAGGTCTACTTTTAAGAACATTAAGTTAAAATAAAAAAGGATATAACAGAACAAAACTACAACACTATCTAATCAATATATTCAAA
ACAATGGTGTCATTTTCTCATAATTCCCCCAACTTTTAATATATGAGTAATCTATATCGGGTGAAAAATATAACTATATCATTGATCAACTAAGC
TTCAACTTCATATTAGATTGGACTGGTTTCATGAATCCTCCATATCTATTCTTCTTTAGTCAAGCCCAATTTACTGGAACAAGTCTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E372538] SGN-U565094 Tomato 200607 Build 2 3 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T184995 [Download][View] Facility Assigned ID: FA0AAD19AA01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.936 Expected Error Rate: 0.0059 Quality Trim Threshold: 14.5