Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E373239

Search information 
Request: 373239Match: SGN-E373239
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C179271Clone name: TUS-31-F5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C179271 is on microarray TOM1 spot ID 1-1-4.2.2.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C77217 [cLES-20-E6] Trace: SGN-T102041 EST: SGN-E290362 Direction: 5' Facility: TIGR
Clone: SGN-C179271 [TUS-31-F5] Trace: SGN-T185376 EST: SGN-E373238 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E373239Length: 708 bp (909 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E373239 [] (trimmed) AGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGGTCACACAGTGTGGGTCGAACACA
CTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAA
TTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAG
GGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGA
ATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCC
ACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAA
TGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAA
ATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E373239] SGN-U577555 Tomato 200607 Build 2 210 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T185377 [Download][View] Facility Assigned ID: FA0AAD19CC03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.968 Expected Error Rate: 0.0077 Quality Trim Threshold: 12.5