Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E373601

Search information 
Request: 373601Match: SGN-E373601
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180030Clone name: TUS-33-E20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C87230 [cLET-45-L16] Trace: SGN-T111848 EST: SGN-E300676 Direction: 5' Facility: TIGR
Clone: SGN-C180030 [TUS-33-E20] Trace: SGN-T186565 EST: SGN-E373600 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E373601Length: 729 bp (922 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E373601 [] (trimmed) GGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATG
ATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGG
ATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAGA
TCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTC
TAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTA
TCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATGGGGTTGGCTATATGAAGCATTGCTGGCTATTTTT
CTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACC
TTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E373601] SGN-U564499 Tomato 200607 Build 2 30 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T186566 [Download][View] Facility Assigned ID: FA0AAD21BC10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.967 Expected Error Rate: 0.0034 Quality Trim Threshold: 14.5