Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E375409

Search information 
Request: 375409Match: SGN-E375409
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173286Clone name: TUS-15-L20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173286 is on microarray TOM1 spot ID 1-1-5.4.19.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C1976 [cLEC-14-H18] Trace: SGN-T26352 EST: SGN-E204736 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E375409Length: 291 bp (910 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E375409 [] (trimmed) GCAAGTGAAAGGAAGTGAAAATCCGCGAAGTTATTACAAGTGTACATTTCCAAATTGTCCTACAAAGAAGAAGGTTGAAAGGAACTTGGATGGAC
ACATTACTGAGATAGTTTATAAAGGGAGTCATAATCATCCCAAACCTCAATCCACTAGAAGATCATCTTCACAATCGATTCAAAACCTTGCTTAC
TCCAACTTGGATGTAACAAACCAGCCAAACGCGTTTCTTGAAAATGGTCAAAGAGACTCCTTTGCTGTTACAGACAATTTTTCAGCTTCTTTTGG
AGATGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E375409] SGN-U577212 Tomato 200607 Build 2 46 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189023 [Download][View] Facility Assigned ID: FA0AAD3DF10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.944 Expected Error Rate: 0.0068 Quality Trim Threshold: 14.5