Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E375467

Search information 
Request: 375467Match: SGN-E375467
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180476Clone name: TUS-34-H10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180476 is on microarray TOM1 spot ID 1-1-7.4.19.9 [Order] [Tomato Microarray Database]
See unigene SGN-U578195 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C33673 [cLEG-27-L4] Trace: SGN-T68545 EST: SGN-E254469 Direction: 5' Facility: TIGR
Clone: SGN-C180476 [TUS-34-H10] Trace: SGN-T187234 EST: SGN-E375466 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E375467Length: 730 bp (952 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E375467 [] (trimmed) GGAAACTGACAGTGAATCTGCTGACCTGCAGAAGGGATGGGCATCTGTACAGAGTATTCCAAGGACAGTGCTTTACGACAAGAAGACAGGGACAC
ATCTACTTCAGTGGCCAGTGGAAGAAATTGAAAGCTTAAGAGTGGGTGATCCTACTGTTAAGCAAGTCGATCTTCAACCAGGCTCAATTGAGCTA
CTCCGTGTTGACTCAGCTGCAGAGTTGGATATAGAAGCCTCATTTGAAGTGGACAAAGTCGCGCTTCAGGGAATAATTGAAGCAGATCATGTAGG
TTTCAGTTGCTCTACTAGTGGAGGTGCTGCTAGCAGAGGCATTTTGGGACCATTTGGTGTCATAGTAATTGCTGATCAAACGCTATCTGAGCTAA
CGCCAGTTTACTTTTACATTTCTAAAGGAGCTGATGGTCGTGCAGAGACTCACTTCTGTGCTGATCAAACTAGATCCTCTGAGGCTCCGGGAGTT
GGTAAACAAGTTTATGGTAGTTCAGTACCTGTGTTGGACGGTGAAAAACATTCAATGAGATTATTGGTGGATCACTCAATTGTGGAGAGCTTTGC
TCAAGGAGGAAGAACAGTCATAACATCGCGAATTTACCCAACAAAGGCAGTAAATGGAGCAGCACGACTCTTTGTTTTCAACAATGCCACAGGGG
CTAGCGTTACTGCCTTCGTCAAGATTTGGTCACTTGAGTCAGCTAATATTCAATCCTTTCCCTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E375467] SGN-U578195 Tomato 200607 Build 2 342 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T187235 [Download][View] Facility Assigned ID: FA0AAD22DD05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.977 Expected Error Rate: 0.0061 Quality Trim Threshold: 14.5