EST details — SGN-E375854

Search information 
Request: 375854Match: SGN-E375854
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173068Clone name: TUS-15-C18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173068 is on microarray TOM1 spot ID 1-1-7.3.20.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C1377 [cLEC-11-N23] Trace: SGN-T25751 EST: SGN-E201804 Direction: 5' Facility: TIGR
Clone: SGN-C173068 [TUS-15-C18] Trace: SGN-T1270 EST: SGN-E378338 Direction: 5' Facility: Giov. Lab
Clone: SGN-C173068 [TUS-15-C18] Trace: SGN-T188707 EST: SGN-E375853 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E375854Length: 644 bp (903 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E375854 [] (trimmed) ACGAATTTACAGAATATTAATCATATATGATAAAGTCAATACTTTAATCTCTTTTTATTTACATGGATAAGATGTAAAAAACGATAGCAAAAACA
AGTTAAATTAGAAGGAACTATATACACAAGCAACAGGACACAACTGGCATACTTTTGACTAGCTATATACATTTACCTTGAGTGGGAAACTCTGC
TTCAGCTCTCCCAAATTTTGGAGAGTCAAATGGTAATCCAAATAATCTCTATAATGATTTCCCTTCCTCACTAGACTCCACATTCATTCTCAAAA
CAGAAGATATATTTCTGGAGAAGATGATATTTCCATCGTTGTCTGTTGTGTGATACGATGCTAGACCATTACCCATCACAATTCTGCACCCCGCT
GATACATCACATGATAATTTTACACCAAAATATCTCACATGATCCTTAACACTGTTGCCTTTCACCGACCTGCTGCAAGAAGGATCCTCCCCAGA
ATTATCGCAGACCTTTTCAACTGTATAAACTAAACTTCCAAAGCCAAGATCATAAAGCCAGACCTCTCTAGGGAAATGGCGATAAGTTTTGTGAG
GGAAGTACTGATAGTAAGGGGGCAAATGAGGCACAATATCATGACGATTTGTAACACGATTTGTATTGGGGACC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E375854] SGN-U582712 Tomato 200607 Build 2 24 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T188708 [Download][View] Facility Assigned ID: FA0AAD3BB09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.958 Expected Error Rate: 0.0063 Quality Trim Threshold: 14.5