EST details — SGN-E376652

Search information 
Request: 376652Match: SGN-E376652
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174366Clone name: TUS-18-I20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174366 is on microarray TOM1 spot ID 1-1-5.1.15.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C22958 [cLED-4-B3] Trace: SGN-T49277 EST: SGN-E231508 Direction: 5' Facility: TIGR
Clone: SGN-C174366 [TUS-18-I20] Trace: SGN-T189267 EST: SGN-E376653 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E376652Length: 645 bp (912 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E376652 [] (trimmed) CATTTGATAATATATCGGATTAAAAAACCAAAACAAGTATCACTGTATTAAGAGGTACAAGAAAAAGCCACATAAACACACAGTACTACCACATT
AAGCAAAAACAGTTTTAGAGAACCATTATTTGTCACAAGGTTCTTGGACTGCCTAGCTAGATGGATGCTGATAACGCCTCGGATTCGTCAAACAA
ACTGATGCTGAAGCTAAAAGTTATGCATGACAGTTGCTTGTTCTTTTCATCCACCATCTTCATTGTCAGAGTGTATGATCCAGGTGGGGTAAATC
CAGGCAACTTTTGTGAGTGGGAAATGACAAAATCACCGGACGCTGGGCAAGATGTCTTTTTACAAAGGTCAATGTCCTCATGGTGGACATTTAAA
AAAAAATACTTGACATCAATCTCCAGCTTTCCTCCAGTGAGATTCCTACCGGTCTCTGCAGTAATACTGAATGTTGTTGTTCTACCTCCCTTAAT
AGGATAAGGAGTTATATCTATTTGACTGACCTTAACATCATAGTTGGCCTTTTTATTGCAATAATCGAAATCGGTGGATTTAGCTGAAGTGAGTG
AAGAGACAAGACATAGTAAGAAGAGAAGAGTGATGAAGAGTTTCATAGCTGCCATTGCCATTGATTGAAGCAAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E376652] SGN-U577903 Tomato 200607 Build 2 72 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189266 [Download][View] Facility Assigned ID: FA0AAD6BE10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.964 Expected Error Rate: 0.0112 Quality Trim Threshold: 12.5