EST details — SGN-E376980

Search information 
Request: 376980Match: SGN-E376980
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175273Clone name: TUS-20-O15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175273 is on microarray TOM1 spot ID 1-1-2.3.13.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24214 [cLED-7-I22] Trace: SGN-T50529 EST: SGN-E232020 Direction: 5' Facility: TIGR
Clone: SGN-C175273 [TUS-20-O15] Trace: SGN-T1359 EST: SGN-E378512 Direction: 5' Facility: Giov. Lab
Clone: SGN-C175273 [TUS-20-O15] Trace: SGN-T189734 EST: SGN-E376979 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E376980Length: 665 bp (935 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E376980 [] (trimmed) CAGCTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCA
GAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAA
TTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAG
GCCAGCAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTT
GCAGAGATGGTTCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATC
TGGGCAGGTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGAT
TCAGGAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAGGAGGCCGTGACCATTGTGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E376980] SGN-U564482 Tomato 200607 Build 2 30 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189735 [Download][View] Facility Assigned ID: FA0AAD8AH08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.973 Expected Error Rate: 0.0028 Quality Trim Threshold: 14.5