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EST details — SGN-E377048

Search information 
Request: 377048Match: SGN-E377048
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175277Clone name: TUS-20-O19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175277 is on microarray TOM1 spot ID 1-1-6.3.13.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24221 [cLED-7-I7] Trace: SGN-T50319 EST: SGN-E231810 Direction: 5' Facility: TIGR
Clone: SGN-C175277 [TUS-20-O19] Trace: SGN-T189802 EST: SGN-E377047 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E377048Length: 641 bp (904 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377048 [] (trimmed) ATTCGTGTTATTGGCAGTGAGCTTGTTCAGAAATATGTTGGTGAGGGAGCTAGGATGGTTCGTGAACTGTTCCAGATGGCGCGCTCTAAGAAGGC
GTGCATTGTTTTTTTCGATGAAGTAGACGCCATTGGAGGTGCACGATTTGATGATGGTGTAGGTGGAGACAATGAGGTTCAGCGTACCATGCTTG
AAATTGTTAACCAACTAGATGGATTTGATGCTCGGGGGAATATAAAGGTTCTCATGGCCACCAATAGGCCTGATACACTTGATCCAGCATTGCTA
CGTCCTGGACGTTTGGATCGCAAAGTTGAGTTTGGTCTACCTGATCTAGAGAGTAGAACCCAGATATTTAAGATTCATACACGGACAATGAATTG
TGAGCGCGATATTCGATTTGAACTTTTGGCACGTCTCTGTCCAAACTCTACAGGAGCTGATATAAGAAGTGTGTGCACGGAGGCTGGAATGTATG
CTATTCGAGCAAGGAGGAAAACTGTTACAGAGAAAGACTTTCTGGATGCCGTTAACAAGGTCATTAAGGGATATCAGAAATTCAGTGCAACACCA
AAGTATATGGTCTACAATTAGTTGTACTACATTTTCTTTGGTACAAACAATCAAGCATTGGCAGGAATGAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377048] SGN-U570780 Tomato 200607 Build 2 22 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189803 [Download][View] Facility Assigned ID: FA0AAD8AH10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.977 Expected Error Rate: 0.0039 Quality Trim Threshold: 14.5