EST details — SGN-E377516

Search information 
Request: 377516Match: SGN-E377516
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175289Clone name: TUS-20-P7
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175289 is on microarray TOM1 spot ID 1-1-2.4.13.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24241 [cLED-7-J7] Trace: SGN-T50582 EST: SGN-E232073 Direction: 5' Facility: TIGR
Clone: SGN-C175289 [TUS-20-P7] Trace: SGN-T190016 EST: SGN-E377517 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E377516Length: 525 bp (918 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377516 [] (trimmed) GGGAAACAAAGGGAATTATTAACTGTTATTATTCACTCAATTACTTGTCTCACATTAACGGGGATATCAAAAGGAAAAAGTAAAACATCAAATTG
CTAAAACAATTTTCAAAGCTCAGGAGTAAAATGATCCTGAATAATCACAATTTTCATCATCATTTTTTACCTAGCGGGGGTTGTTGCTCCTCGTT
GAAATAATCATTCCGGATTTTTCGTGAAAGCTGGTTTATCCCTGTTCCACCCATTGCCACATTTACCCTAAAAAGGTTCCAGTTTTTTGGAGTAA
TCCCCAACCTTTACCGAAACCATATAATTCCAGTTGCTGTACCCGCTTTTTGTTGAGGATATAAAATCTTTTTTGGAGGTTTACCAAAGTCTGCA
ATATTTGCAATACTGATGCCCCACTTGAAGGTTGGTGCCCAAAAATGAATGGTTTTTGGACCAGCGGGATGATTCCATAAACCCTGGACCTTTGA
AGTCCCCATGAAAGTAAAAACCTCAGCTTTTGAAAATTTTCCTCGTGCCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377516] SGN-U578123 Tomato 200607 Build 2 17 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190015 [Download][View] Facility Assigned ID: FA0AAD8CH04FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.931 Expected Error Rate: 0.0187 Quality Trim Threshold: 12.5