EST details — SGN-E377536

Search information 
Request: 377536Match: SGN-E377536
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175003Clone name: TUS-20-D9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175003 is on microarray TOM1 spot ID 1-1-8.4.13.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23841 [cLED-6-H7] Trace: SGN-T49979 EST: SGN-E232993 Direction: 5' Facility: TIGR
Clone: SGN-C175003 [TUS-20-D9] Trace: SGN-T190036 EST: SGN-E377537 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E377536Length: 621 bp (922 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377536 [] (trimmed) AAAAAAAACGACCAATCACAGAGTTCATTTATTCATGACATATTTACCCTGAAAAATGTTTGGGATATTGTTTTCCAGTATAAAGGAGGCAAAAT
ATACCTCACACAAATAACAAAATAAGCAACACATCCATAGCAAACACCCAAAAAACAACATTTGCAAAAACATGCCAACTTTTATTTAGTATTGA
TAGTATGACATGGATCATAAAGCACTCACTCTTTTTGCTCAATCATCGTAGTGTTTGCGGTGGTGGGGGTAGCGATGTTTTTTTTCCTCGTCATC
GTCGTCGGAGTTGTCCTCACCATATTTTTTGCGACCATAGCCTTCATCATCATCACCACCCCTTTCGTAGCTGGGTTTCCTGTAGTCCTCCTCCT
CGGATCTTCCATAGGGAGGCCTTTCGTACCCTTCGCCTTCCTCAGCCTGGTAGCTTGGACGCCCATAACTCGGCCTCTCACCTTCCTTTTGTCCA
TAGCTAGGCTTCCTGCCATAGCCACCAAATCCGTATTCTTCGGATTCGTTCCTACGCCCATAACCCGACCCGTATTCAAAGCTTGGCTCCTCGTA
TTCACTCTTCTTCCGATACCCTGATCCGAATTCGGAAGCGGGTTCTTTATA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377536] SGN-U578197 Tomato 200607 Build 2 87 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190035 [Download][View] Facility Assigned ID: FA0AAD8CB05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.959 Expected Error Rate: 0.0127 Quality Trim Threshold: 12.5