EST details — SGN-E377540

Search information 
Request: 377540Match: SGN-E377540
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175011Clone name: TUS-20-D17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175011 is on microarray TOM1 spot ID 1-1-8.4.13.6 [Order] [Tomato Microarray Database]
See unigene SGN-U581008 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C23852 [cLED-6-I17] Trace: SGN-T50118 EST: SGN-E233132 Direction: 5' Facility: TIGR
Clone: SGN-C175011 [TUS-20-D17] Trace: SGN-T1339 EST: SGN-E378358 Direction: 5' Facility: Giov. Lab
Clone: SGN-C175011 [TUS-20-D17] Trace: SGN-T190040 EST: SGN-E377541 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E377540Length: 613 bp (934 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377540 [] (trimmed) AAGAAAAAAAAGAAACAACTTCATTTGGAACTAAAAAGCCATAAATGGCCTGCCATTAAAGCTAAAAAATTAGCTTTTGAAAGCGTAATTTACAA
TACAGCATACTACTTAATTATAACTTAATACCCAACAGAAAAAACATATAATCACAAATATAGATAGCAAGTCCCCAACTCGCATAGGAAAAAAA
ACACTATTTACATGAAAATTTTTTACTGTTTTTTTCCACCCAAAAACTCTCAGCACTTTTCATGATGCTTAAATCTGGGGTTCCCACTGTAGAGC
CAGTCATAAACAGTAGGAGCGTTAGGGGGAGAAGGGTTATCAAACACTTTAGCACCAATTTTCCTGGGAGCTAAATTGCTCCCTGGGGGAAAAAC
ACTCCTCCACACATTTTTTTTTCGTACCGTCGGGGATATATTTGTCGGGGTCACCGGCGTACCTGGGGTCGGGGGACTTGCCGGCATCGACAGAA
ATCTCTGGGACTTGCTAAATCCTTTTCCTGATTCACCACCAGTTTGAATAGTGAGGCTTTTTTTGAGTTTGCCGAGTCCTTTATTAGGGCTGGGA
CCAGCCATAACATCATCCCAAAGTTTATCAATCAACACCATTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377540] SGN-U581008 Tomato 200607 Build 2 103 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190039 [Download][View] Facility Assigned ID: FA0AAD8CB09FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.956 Expected Error Rate: 0.0156 Quality Trim Threshold: 12.5