EST details — SGN-E377986

Search information 
Request: 377986Match: SGN-E377986
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175156Clone name: TUS-20-J18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175156 is on microarray TOM1 spot ID 1-1-7.2.13.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24018 [cLED-6-P22] Trace: SGN-T50106 EST: SGN-E233120 Direction: 5' Facility: TIGR
Clone: SGN-C175156 [TUS-20-J18] Trace: SGN-T190207 EST: SGN-E377985 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E377986Length: 646 bp (919 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377986 [] (trimmed) GTTATCTTAAACGTCTATGACTTGAGTCAAGGTTTAGCTCGACAGTTATCTACTACTTTTTTGGGAAAAGCTATTGAAGGAATATGGCACACAGG
AGTAGTGGTTTATGGTCATGAATATTATTTTGGAGGCGGTATACAACATGCTCCAGCTGGGACGACACCATATGGGACTCCTATTAAAGTTGTAG
ATCTGGGTGTCACCCACATACCAAAGGATGTCTTTGAAATGTATTTGCAAGAGATAAGCCCTCGGTATACTGCAGAGACATACAGTTTGCTTACC
CACAACTGCAACAATTTCAGCAATGAGATTGCTCAATTTTTGGTCGGTGCAACCATTCCAGAATATATTTTGAATCTTCCTAATGAGGTTACAAA
TAGCCCGATGGGTGCCCTTATAATGCCTATGATACAACAACTGGAATCAACGTTGAGGGCTAATGCAGTACCACAAGCACCCCAGTTCCGACCAG
CTACTGTTGCTCCTGCTTCCCAGCCGACACTTTCTGTTGGGAAGTCCTCTAGTAGCGGTATTAATCAATCCAAAAAGCCCGAGAGCCAAGATGGA
GAGAAGAAGAATGTTAATGTGCCCTCTGCGGTCAAACCTGTGGAAGAGCAGGAGAAGACGCCTGCNTATGCGGTTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377986] SGN-U567176 Tomato 200607 Build 2 78 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190208 [Download][View] Facility Assigned ID: FA0AAD8DE09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.992 Expected Error Rate: 0.0072 Quality Trim Threshold: 14.5