EST details — SGN-E378178
| Search information |
| Request: 378178 | Match: SGN-E378178 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C178658 | Clone name: TUS-29-L16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C178658 is on microarray TOM1 spot ID 1-1-1.4.4.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C72335 [cLER-1-N8] | Trace: SGN-T92006 | EST: SGN-E280452 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C178658 [TUS-29-L16] | Trace: SGN-T184291 | EST: SGN-E371524 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178658 [TUS-29-L16] | Trace: SGN-T184292 | EST: SGN-E371525 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378178 | Length: 882 bp (1196 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378178 [] (trimmed)
AGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTC
GTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGT
GGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAG
AATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTG
GTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGAAGGGAGACTATTATCGTTATCTTGCAGA
ATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAGGCAGCTACAACTGCTGCGGAGGCGGAATTAGCACCCA
CTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGGCATGCCATCTTGCAAAACAG
GCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCAC
CTTGTGGACTTCTGATCTTCAGAGGATGCTGAAGATGCCCAAAGGGAGATGCCCACAACAAGCTGGTGGAGGTGAGATGCAGAGTGAATGGGCCT
ATAGTTAGACTACTATGTGTATTTGGA
GTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGT
GGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAG
AATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTG
GTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGAAGGGAGACTATTATCGTTATCTTGCAGA
ATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAGGCAGCTACAACTGCTGCGGAGGCGGAATTAGCACCCA
CTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGGCATGCCATCTTGCAAAACAG
GCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCAC
CTTGTGGACTTCTGATCTTCAGAGGATGCTGAAGATGCCCAAAGGGAGATGCCCACAACAAGCTGGTGGAGGTGAGATGCAGAGTGAATGGGCCT
ATAGTTAGACTACTATGTGTATTTGGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378178] | SGN-U578295 | Tomato 200607 | Build 2 | 99 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1505 [Download][View] | Facility Assigned ID: TUS29L16.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0030 | Quality Trim Threshold: 14.5 |
Working
