EST details — SGN-E378181
| Search information |
| Request: 378181 | Match: SGN-E378181 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C178894 | Clone name: TUS-30-F12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C178894 is on microarray TOM1 spot ID 1-1-5.2.3.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C71336 [cLER-17-I9] | Trace: SGN-T95963 | EST: SGN-E283112 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C178894 [TUS-30-F12] | Trace: SGN-T184931 | EST: SGN-E372139 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178894 [TUS-30-F12] | Trace: SGN-T184932 | EST: SGN-E372140 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378181 | Length: 607 bp (1205 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378181 [] (trimmed)
AGGCTACGACAACCACATTCTACCTTCATCTCTCTCTACTTTCCGATTCACCTTCCTCCTCTTGATTTTGTTATTGTTCTATCGGCTATGTCAAT
AGACGGTGGAAGATTTTACTGGGAGAGGAATTCCAATGAAAAGGTCAAAGGAATTGTGATAATCTTCGCTTGGGTTTCAATTCAGGAAACTGAAC
TGAAGAGCTATGTTGATCTTTATGCTTCTCTTGGTTGGAGCTCTCTTGTCTGCCTTGCCGATTTCGCTACCCTATACATAACTGAGAAGGCTACA
TCACTGGCATATTCTCTTCTGAGAGAGCTTGTCGAGGAGCTAAGATGTCGGCCTTGTCCAGTTGTTGTGGCAGCTCTTTCTGGTGGTTCTAAGGC
CTGCATGTATAAGTTTTTTCAGATTGTTAAAGGGAGATCTGAAGCTCAAGTTAATCTGGTACGCAATTCTTTGAATCTGCTGTGAGGAGGACAGC
CAATTGGTCATTAACTGCATCTCANGTCAAATTTATGATTCTTGTCCTGTTGATTTCACTGCAGACTTTGGAGCACAATTTGCTGTGCCTCCCCA
CATTCTAAAGTTCCCCGGCTCCACACAGCTACTGTCT
AGACGGTGGAAGATTTTACTGGGAGAGGAATTCCAATGAAAAGGTCAAAGGAATTGTGATAATCTTCGCTTGGGTTTCAATTCAGGAAACTGAAC
TGAAGAGCTATGTTGATCTTTATGCTTCTCTTGGTTGGAGCTCTCTTGTCTGCCTTGCCGATTTCGCTACCCTATACATAACTGAGAAGGCTACA
TCACTGGCATATTCTCTTCTGAGAGAGCTTGTCGAGGAGCTAAGATGTCGGCCTTGTCCAGTTGTTGTGGCAGCTCTTTCTGGTGGTTCTAAGGC
CTGCATGTATAAGTTTTTTCAGATTGTTAAAGGGAGATCTGAAGCTCAAGTTAATCTGGTACGCAATTCTTTGAATCTGCTGTGAGGAGGACAGC
CAATTGGTCATTAACTGCATCTCANGTCAAATTTATGATTCTTGTCCTGTTGATTTCACTGCAGACTTTGGAGCACAATTTGCTGTGCCTCCCCA
CATTCTAAAGTTCCCCGGCTCCACACAGCTACTGTCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378181] | SGN-U569771 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1515 [Download][View] | Facility Assigned ID: TUS30F12.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0069 | Quality Trim Threshold: 14.5 |
Working
