EST details — SGN-E378248
| Search information |
| Request: 378248 | Match: SGN-E378248 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C174493 | Clone name: TUS-18-O3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C174493 is on microarray TOM1 spot ID 1-1-6.3.16.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C23120 [cLED-4-I4] | Trace: SGN-T49250 | EST: SGN-E231481 | Direction: 5' | Facility: TIGR |
| Sequence |
| Sequence Id: SGN-E378248 | Length: 831 bp (1142 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E378248 [] (trimmed)
AGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTG
ATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTA
GCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAAT
TCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATA
CGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAATGGGGAGGATGGAGGGTATTTGGGGTAAAGATTGT
TTAGAATTCAAGCCAGAAAGATGGTTGGAAGACGGGGTTTTTAAGGCACAGTGTCCTTTTAAATATCCCGTTTTTCAAGGTGGTGTTAGGGTTTG
TTTGGGTAAAGATTTATCTATTGTGGAAATGAAGAGTGTTGCTTTGGCTTTGATTAGGCAATTCGACTTTCAAGTTCATTTGGCTAAAGACCAGG
CACCTAAGTTCATGCCGGGATTGACAGCCACCGTGAGAGGCGGACTTCCCATCATGGTTCAAAAAGACGAGAANCATAGACACTGACACGAATTC
AAGATTTAGAGTCAGTATTGTACAACTTTTGTAATTAATTATTAGTTTATACTTCTATCTTTTAGCTAGCG
ATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTA
GCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAAT
TCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATA
CGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAATGGGGAGGATGGAGGGTATTTGGGGTAAAGATTGT
TTAGAATTCAAGCCAGAAAGATGGTTGGAAGACGGGGTTTTTAAGGCACAGTGTCCTTTTAAATATCCCGTTTTTCAAGGTGGTGTTAGGGTTTG
TTTGGGTAAAGATTTATCTATTGTGGAAATGAAGAGTGTTGCTTTGGCTTTGATTAGGCAATTCGACTTTCAAGTTCATTTGGCTAAAGACCAGG
CACCTAAGTTCATGCCGGGATTGACAGCCACCGTGAGAGGCGGACTTCCCATCATGGTTCAAAAAGACGAGAANCATAGACACTGACACGAATTC
AAGATTTAGAGTCAGTATTGTACAACTTTTGTAATTAATTATTAGTTTATACTTCTATCTTTTAGCTAGCG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378248] | SGN-U567361 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1314 [Download][View] | Facility Assigned ID: TUS18O3.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.977 | Expected Error Rate: 0.0036 | Quality Trim Threshold: 14.5 |
Working
