EST details — SGN-E378254
| Search information |
| Request: 378254 | Match: SGN-E378254 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C175015 | Clone name: TUS-20-D21 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175015 is on microarray TOM1 spot ID 1-1-4.4.13.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C23857 [cLED-6-I21] | Trace: SGN-T50217 | EST: SGN-E233231 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175015 [TUS-20-D21] | Trace: SGN-T189965 | EST: SGN-E377466 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378254 | Length: 803 bp (1180 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378254 [] (trimmed)
GTTATTCAGAGACGAGTTGCTTTCAGCCCTTGCCCATCTTTGCGCACCAGATGACCAAAAGATCATTTTCATTGATAACAGTGGATTAGAATTGC
TTTTGGAGCTCTTTGACTCAACAAACTTGAAACACAAAAGAGATGGCTCTGCAGCTTTATGCAAATTGGCTAATAAAGCTAGCTCACTTTCACAA
GTCGATGCTGCTCCTCCTTCCCCAGTACCTCAGGTCTATCTGGGCGAACAATATGTAAATAATTCTACACTATCTGATGTAACATTTTTAGTTGA
GGGCAAACGGTTTTATGCCCATAGGATTTGTTTACTAGCTTCTTCTGATGCATTTCGAGCTATGTTTGATGGTGGCTACCGGGAGAGAGATGCCA
AAGACATCGAAATCCCAAATATCCGATGGGACGTTTTTGAGTTGATGATGAGGTACATATACACAGGATCTGTTGATGTTAATTTGGATGTTGCA
CAAGATCTTCTAAGAGCTGCAGACCAGTATCTATTAGAGGGCCTTAAACGTCTTTGCGAGTATGCCATCGCACAAGATATATCTGTGGAAAGTGT
CTCTCTCATGTTCGAATTGTCAGAGGCATTTAACGCTTTGACTTTGCGTAATGCTTGCATTCTATTCATTTTGGAAAAGTTTGACCAATTAAGTG
TTATGCCATGGTATTCGCATTTGATTCAACGTGTATTACCTGAAACTCGAAGTTACTTTGAAAGGGTGCTTACCAGGGCTATTCAAAATGACATG
CGAGTCTAGATGTTTCAGATTCAGTTTTGTTTTTTTATTAATT
TTTTGGAGCTCTTTGACTCAACAAACTTGAAACACAAAAGAGATGGCTCTGCAGCTTTATGCAAATTGGCTAATAAAGCTAGCTCACTTTCACAA
GTCGATGCTGCTCCTCCTTCCCCAGTACCTCAGGTCTATCTGGGCGAACAATATGTAAATAATTCTACACTATCTGATGTAACATTTTTAGTTGA
GGGCAAACGGTTTTATGCCCATAGGATTTGTTTACTAGCTTCTTCTGATGCATTTCGAGCTATGTTTGATGGTGGCTACCGGGAGAGAGATGCCA
AAGACATCGAAATCCCAAATATCCGATGGGACGTTTTTGAGTTGATGATGAGGTACATATACACAGGATCTGTTGATGTTAATTTGGATGTTGCA
CAAGATCTTCTAAGAGCTGCAGACCAGTATCTATTAGAGGGCCTTAAACGTCTTTGCGAGTATGCCATCGCACAAGATATATCTGTGGAAAGTGT
CTCTCTCATGTTCGAATTGTCAGAGGCATTTAACGCTTTGACTTTGCGTAATGCTTGCATTCTATTCATTTTGGAAAAGTTTGACCAATTAAGTG
TTATGCCATGGTATTCGCATTTGATTCAACGTGTATTACCTGAAACTCGAAGTTACTTTGAAAGGGTGCTTACCAGGGCTATTCAAAATGACATG
CGAGTCTAGATGTTTCAGATTCAGTTTTGTTTTTTTATTAATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378254] | SGN-U577119 | Tomato 200607 | Build 2 | 16 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1340 [Download][View] | Facility Assigned ID: TUS20D21.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.978 | Expected Error Rate: 0.0112 | Quality Trim Threshold: 14.5 |
Working
