EST details — SGN-E378275
| Search information |
| Request: 378275 | Match: SGN-E378275 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C177736 | Clone name: TUS-27-F6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C177736 is on microarray TOM1 spot ID 1-1-3.2.6.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C62026 [cLEM-1-D5] | Trace: SGN-T83592 | EST: SGN-E270219 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C177736 [TUS-27-F6] | Trace: SGN-T193261 | EST: SGN-E391935 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177736 [TUS-27-F6] | Trace: SGN-T197834 | EST: SGN-E396508 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378275 | Length: 821 bp (1322 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378275 [] (trimmed)
AATTCGGAACAAGGGCTGCTCCAAAACTCGCTGATCATTCTCAATGGCGCCCCCAATTTTCCAACTGCTTTACGTATAAGTTCAATTCCTCTTCC
ACTACTCTCCGATTCTTCACTTCAATTTCGCTCTGAAAAAATCGAGAATGGCGAAGAATCACGTTCCCGATTGGCTCAACAATTCTCTCTGGTCT
TCTCGTTCGCCGTCACCACAACAATCGTTAACTCCTGCGGAGACTTCAATTGACAGTGAGGATATGACTCGCTCAAAGAATTCAGCTGTAAAATC
ATCGGTTAGTGCAGAGTCTCCGGTAAATTTGCCAGTTCCAATGCCGCCTCCTGCTGTAATTAGAGCTGAAACGCGTCCTGTGCCGCCTCCGAGAC
CTAAGGCGGAAATTGTTTGTCCTTTAAATGGTAATAATAGTAGTAATTGCTGTAGTGATGGTGAAAATGGGAGCTCAGCTAGTTGTACTACGACA
TCTGGTATCTCTTCAACTGAGGATATTTCTCGCCAGGCTCAGCTTTCTCAAGAGTTGTCAAGGAAGATTATTAATTTGGGGGAAGTCCGGAGGCT
AGCATCACAAGGGATACCAGATGGACCTGGCCTTCGTGCTATAGTATGGAAGCTACTGTTGGGGTATTTGCCAACTGACAAAGCGTTATGGCCTA
CAGAACTGGCTAAGAAGAGGCCTCAGTACAAGCAATTTAAAGAGGAGCTTCTTATGAACCCTTCAGAGATTGCGAGGAGGTTGGAGAAGTCTGCA
AGTCTTGAGAATGATGGAACAGAAACAGACATTGAAGGTAAAGGTTTACTCTNCAGATCAA
ACTACTCTCCGATTCTTCACTTCAATTTCGCTCTGAAAAAATCGAGAATGGCGAAGAATCACGTTCCCGATTGGCTCAACAATTCTCTCTGGTCT
TCTCGTTCGCCGTCACCACAACAATCGTTAACTCCTGCGGAGACTTCAATTGACAGTGAGGATATGACTCGCTCAAAGAATTCAGCTGTAAAATC
ATCGGTTAGTGCAGAGTCTCCGGTAAATTTGCCAGTTCCAATGCCGCCTCCTGCTGTAATTAGAGCTGAAACGCGTCCTGTGCCGCCTCCGAGAC
CTAAGGCGGAAATTGTTTGTCCTTTAAATGGTAATAATAGTAGTAATTGCTGTAGTGATGGTGAAAATGGGAGCTCAGCTAGTTGTACTACGACA
TCTGGTATCTCTTCAACTGAGGATATTTCTCGCCAGGCTCAGCTTTCTCAAGAGTTGTCAAGGAAGATTATTAATTTGGGGGAAGTCCGGAGGCT
AGCATCACAAGGGATACCAGATGGACCTGGCCTTCGTGCTATAGTATGGAAGCTACTGTTGGGGTATTTGCCAACTGACAAAGCGTTATGGCCTA
CAGAACTGGCTAAGAAGAGGCCTCAGTACAAGCAATTTAAAGAGGAGCTTCTTATGAACCCTTCAGAGATTGCGAGGAGGTTGGAGAAGTCTGCA
AGTCTTGAGAATGATGGAACAGAAACAGACATTGAAGGTAAAGGTTTACTCTNCAGATCAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378275] | SGN-U581476 | Tomato 200607 | Build 2 | 18 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1462 [Download][View] | Facility Assigned ID: TUS27F6.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.992 | Expected Error Rate: 0.0089 | Quality Trim Threshold: 14.5 |
Working
