EST details — SGN-E378312
| Search information |
| Request: 378312 | Match: SGN-E378312 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183435 | Clone name: TUS-42-C17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183435 is on microarray TOM1 spot ID 1-1-8.3.1.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14357 [cLEC-7-K23] | Trace: SGN-T25395 | EST: SGN-E202113 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183435 [TUS-42-C17] | Trace: SGN-T194918 | EST: SGN-E393592 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183435 [TUS-42-C17] | Trace: SGN-T195477 | EST: SGN-E394151 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183435 [TUS-42-C17] | Trace: SGN-T199402 | EST: SGN-E398076 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378312 | Length: 891 bp (1098 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378312 [] (trimmed)
TCTGGCTATGGAAAGTAAGAATATTGGAGAAGGAAAGGTAGTATGTGTAACAGGGGCATCTGGTTACATAGCTTCATGGCTGGTCAAGTTGTTGC
TACAACGTGGATATACTGTCAACGCCACTGTTCGGAATCTCAAGGATACAAGTAAAGTGGATCACTTGCTAGGCCTTGATGGAGCGAATGAGAGG
CTGCATCTATTCGAAGCAGAGTTACTTGAAGAGCAATCGTTTGATCCTGCTGTTGATGGTTGTGAAGGTGTCTTTCATACAGCTTCACCTGTTTT
TCTCACAGGGAAATCTAAGGAGGAACTTGTGGATCCTGCTGTGAAAGGAACGTTAAATGTCCTTCGTTCATGTGCCAAATCACCATCTGTCAGAA
GAGTTGTGATAACTTCTTCTACTGCTTCTGTTATATGCAATAAAAATATGTCAACCCCTGGTGCTGTGGCTGATGAGACTTGGTATTCAGATCCT
GAATTCTGCGAGGAAAGAAAGGAGTGGTATCAACTCTCCAAAACGCTGGCTGAGCAGGCTGCTTGGAAATTTGCAAAAGAGAATGGGGTTGACTT
GGTAACGCTCCATCCAGGTTTAGTCATTGGTCCACTTCTGCAGCCTACGCTCAATTTCTCTTGTGAGGCTATAGTGGACGTCATAAAAGAAGGAA
AAGAGGCATGGTCTGGTGGAATATATAGATTTGTTGATGTTAGGGATGTTGCTAATGCACATATTCTAGCCTTTGAGGTTCTTTCAGCAAATGGA
AGATATTGTTTAGTTGGGGCAAAACGATACTCTTCTTTGGTTTTGAAGATTGTTCAAAAGCTTTACCCTTCATCACTCTCCCTAAGAATTTCAAA
GATGGATTTGCTCTTACCCCACACTTCCCAGTATCG
TACAACGTGGATATACTGTCAACGCCACTGTTCGGAATCTCAAGGATACAAGTAAAGTGGATCACTTGCTAGGCCTTGATGGAGCGAATGAGAGG
CTGCATCTATTCGAAGCAGAGTTACTTGAAGAGCAATCGTTTGATCCTGCTGTTGATGGTTGTGAAGGTGTCTTTCATACAGCTTCACCTGTTTT
TCTCACAGGGAAATCTAAGGAGGAACTTGTGGATCCTGCTGTGAAAGGAACGTTAAATGTCCTTCGTTCATGTGCCAAATCACCATCTGTCAGAA
GAGTTGTGATAACTTCTTCTACTGCTTCTGTTATATGCAATAAAAATATGTCAACCCCTGGTGCTGTGGCTGATGAGACTTGGTATTCAGATCCT
GAATTCTGCGAGGAAAGAAAGGAGTGGTATCAACTCTCCAAAACGCTGGCTGAGCAGGCTGCTTGGAAATTTGCAAAAGAGAATGGGGTTGACTT
GGTAACGCTCCATCCAGGTTTAGTCATTGGTCCACTTCTGCAGCCTACGCTCAATTTCTCTTGTGAGGCTATAGTGGACGTCATAAAAGAAGGAA
AAGAGGCATGGTCTGGTGGAATATATAGATTTGTTGATGTTAGGGATGTTGCTAATGCACATATTCTAGCCTTTGAGGTTCTTTCAGCAAATGGA
AGATATTGTTTAGTTGGGGCAAAACGATACTCTTCTTTGGTTTTGAAGATTGTTCAAAAGCTTTACCCTTCATCACTCTCCCTAAGAATTTCAAA
GATGGATTTGCTCTTACCCCACACTTCCCAGTATCG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378312] | SGN-U569057 | Tomato 200607 | Build 2 | 26 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1759 [Download][View] | Facility Assigned ID: TUS42C17.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.962 | Expected Error Rate: 0.0059 | Quality Trim Threshold: 14.5 |
Working
