EST details — SGN-E378342
| Search information |
| Request: 378342 | Match: SGN-E378342 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C173666 | Clone name: TUS-16-L16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C173666 is on microarray TOM1 spot ID 1-1-1.4.18.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C4142 [cLEC-23-K9] | Trace: SGN-T28398 | EST: SGN-E206439 | Direction: 5' | Facility: TIGR |
| Sequence |
| Sequence Id: SGN-E378342 | Length: 982 bp (1164 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E378342 [] (trimmed)
CAGAAGTCCGTCAGCATCTCCTAGAAGGCAACTTACCCCAAGTCCACACAGAGCCTCATCAAGGAAGTCGGTGAAATCTAAAAGTCGAACACCAG
TTAGATCTTATAGAAGGAGTCCAAGTGGAAGCCCTGTTAGGTCTTCTCGAAGGAGCCCAAGCAAAAGTCCTGTTAGGTCTTCACGGAGGAGTGCA
AGCAGAAGTTCAGGTAGGGTTCCTTCAAGGCTTAGGCCTGCTGGAAGGAGCCCTAGCAGAAGCCCTGTCAAGTCTTCTCGACGGAGTGTAAGCCG
AAGTTCAGGTAGGGTTCCTTCTAGGCGAAGCCCAAGCCGAAGTCCAGGTAGGGCTCCTAGCAGGAACAATCGACGCAGCTATTCAAGAAGTCCTG
TTAGTGCAGGTCGTAGGGCTAGATCTCCGGTGTATGATCGTGCGAGGAGCTCTTCAAGAAGTGCTTCAGTGGATGGATCTCCCAAGCGCATTAGG
AGGGGAAGGGGCTTTAGTGAGCGTTACTCCTATGTTCGTAGATACAGGAGTCGGTCTCCTGACCGGTCCCCTGCTAGGCCATACCGTTATGGTGA
GCGTGACAGATATTCGAGATACAGGAGATCACCTAGGCGTTATAGGAGTCCACCTAGAGGAAGAACACCGCCCAGATACAGAGGCAGAAGAAGCC
GAAGCCGCAGCGTCTCACGTAGTCCAGTGCGTTACCGTGGTCGCCGTTATAGTCGAAGCCCTGTACAAAGTCGCTCTCCTGTGGACAGATATCGC
AGGTCACCATCAGCTGAACGCCGTAAATCACCTTCTCGGAGCAGAAGCCGATCAGAGTCGAAATCATCTCGGGGCTCACGATCACCAAAGCAAGT
CAGCAGAGGCAAGTCAGTATCATCCTCGGCGAGTCCCCCTGGGAAGGCAGGTCTGGTTTCCTATGGAGATGGATCTCCTGAAAATCGGATAAGAG
TACATGTAGTTGCTGAGTAGTGCAACTGGACA
TTAGATCTTATAGAAGGAGTCCAAGTGGAAGCCCTGTTAGGTCTTCTCGAAGGAGCCCAAGCAAAAGTCCTGTTAGGTCTTCACGGAGGAGTGCA
AGCAGAAGTTCAGGTAGGGTTCCTTCAAGGCTTAGGCCTGCTGGAAGGAGCCCTAGCAGAAGCCCTGTCAAGTCTTCTCGACGGAGTGTAAGCCG
AAGTTCAGGTAGGGTTCCTTCTAGGCGAAGCCCAAGCCGAAGTCCAGGTAGGGCTCCTAGCAGGAACAATCGACGCAGCTATTCAAGAAGTCCTG
TTAGTGCAGGTCGTAGGGCTAGATCTCCGGTGTATGATCGTGCGAGGAGCTCTTCAAGAAGTGCTTCAGTGGATGGATCTCCCAAGCGCATTAGG
AGGGGAAGGGGCTTTAGTGAGCGTTACTCCTATGTTCGTAGATACAGGAGTCGGTCTCCTGACCGGTCCCCTGCTAGGCCATACCGTTATGGTGA
GCGTGACAGATATTCGAGATACAGGAGATCACCTAGGCGTTATAGGAGTCCACCTAGAGGAAGAACACCGCCCAGATACAGAGGCAGAAGAAGCC
GAAGCCGCAGCGTCTCACGTAGTCCAGTGCGTTACCGTGGTCGCCGTTATAGTCGAAGCCCTGTACAAAGTCGCTCTCCTGTGGACAGATATCGC
AGGTCACCATCAGCTGAACGCCGTAAATCACCTTCTCGGAGCAGAAGCCGATCAGAGTCGAAATCATCTCGGGGCTCACGATCACCAAAGCAAGT
CAGCAGAGGCAAGTCAGTATCATCCTCGGCGAGTCCCCCTGGGAAGGCAGGTCTGGTTTCCTATGGAGATGGATCTCCTGAAAATCGGATAAGAG
TACATGTAGTTGCTGAGTAGTGCAACTGGACA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378342] | SGN-U581272 | Tomato 200607 | Build 2 | 23 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1287 [Download][View] | Facility Assigned ID: TUS16L16.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0072 | Quality Trim Threshold: 14.5 |
Working
