EST details — SGN-E378448
| Search information |
| Request: 378448 | Match: SGN-E378448 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183241 | Clone name: TUS-41-K15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183241 is on microarray TOM1 spot ID 1-1-2.3.3.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C76424 [cLES-17-P24] | Trace: SGN-T101340 | EST: SGN-E288898 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183241 [TUS-41-K15] | Trace: SGN-T191507 | EST: SGN-E390181 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183241 [TUS-41-K15] | Trace: SGN-T191714 | EST: SGN-E390388 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378448 | Length: 476 bp (1122 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378448 [] (trimmed)
CTGCAGGCTTACCCCCAATATATACCCATAAACCCTCAAAACCCTCAAAACTCTCAAAAACTTCATCAATGGCCTCCAAAATCACCAAATCCATT
TCTAGAACCCTCTACACTTATCGTTTTTCTACTCGTTTCATCTCCTCCGCTTCATCGCCGTCGATTACTCAACCGCCGTCACTTCCTGCCGTCGG
ATCTTCACCTCAGCCGTCATTTCTGCTCTCACACTCCCTTCTACCTACCAACCCTAATGGCCTCAAGCCGTTTAGCCTCAATACGGTACGGTTCA
GAGTTAACCGGTCCGGTAGCTCTCCTTACACTCCAGGAACCGGGGACCGAGCTCCGACTGAGATGGCACCACTGTTTTCCGGGATGCGATTACGA
GCACTGGCTCATTTGTATGGATAAGCCTGGTGGAGAAAGAGCTCATAAACAGCAAATGATTGATTGTTATGTCCAAACCCTTGCTAAAGTCCTCG
G
TCTAGAACCCTCTACACTTATCGTTTTTCTACTCGTTTCATCTCCTCCGCTTCATCGCCGTCGATTACTCAACCGCCGTCACTTCCTGCCGTCGG
ATCTTCACCTCAGCCGTCATTTCTGCTCTCACACTCCCTTCTACCTACCAACCCTAATGGCCTCAAGCCGTTTAGCCTCAATACGGTACGGTTCA
GAGTTAACCGGTCCGGTAGCTCTCCTTACACTCCAGGAACCGGGGACCGAGCTCCGACTGAGATGGCACCACTGTTTTCCGGGATGCGATTACGA
GCACTGGCTCATTTGTATGGATAAGCCTGGTGGAGAAAGAGCTCATAAACAGCAAATGATTGATTGTTATGTCCAAACCCTTGCTAAAGTCCTCG
G
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378448] | SGN-U569520 | Tomato 200607 | Build 2 | 33 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1755 [Download][View] | Facility Assigned ID: TUS41K15.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.951 | Expected Error Rate: 0.0034 | Quality Trim Threshold: 14.5 |
Working
