EST details — SGN-E378578
| Search information |
| Request: 378578 | Match: SGN-E378578 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C180706 | Clone name: TUS-35-A24 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C180706 is on microarray TOM1 spot ID 1-1-1.1.17.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C37880 [cLEG-43-H16] | Trace: SGN-T72631 | EST: SGN-E259269 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C180706 [TUS-35-A24] | Trace: SGN-T193600 | EST: SGN-E392274 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378578 | Length: 822 bp (1152 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E378578 [] (trimmed)
CAACAGTCACTCTCTTCAATCCAACAAACAAAAAAGGTCTATAATTCTCAGATCAATCATCGATCATTCTATTGATCCTGTCGATAAATCCAATT
TGAAGAATCTTTAGATTTTAATTCAAAGGGAGAGATTCTTGTTGATCTTTTTGGGGCGGAGTAATGGCTGTAGCTTCTGATCAAGCCACCAGCAT
CTGCAGTCACTGTGACAGAGCAATTCCTTCCACCAATCTTGATCTTCATTTTGCTCACTGCTCCCGGAATCTTGAAAAATGTAAAATCTGTGAGG
ATATGGTTCCTAGAAAGTTTGCGGAGGAACATTTCTTGAGCACTCATGCTCCGGTTGCCTGTTCTTTGTGTAGCGAGACAATGGAACGTGAGATT
TTAGCTGTTCATAGAGGTGAAAATTGCCCAAAAAGGATCGTGACATGCGAGTATTGCGAGTTTCCTTTGCCTGCAATTGATTTATTTGAGCATCA
GGAAGTATGCGGGAACCGGACAGAATTATGCCATCTTTGTAGCAGATACGTTAGACTCCGAGAAAGAGATGTTCATGAGAGTAGATGCAATGGAA
TGATAAGTAATGTTGCAGAATCTTCCAGGAACACACACACAGCTGAAAGAGACCGTGGTCCACCAAGAAGGCAGCCACAAGAATTCTCCAGAAAG
CGGCTTCTGTTCACAATCGCCATAACAGGCATTGCTGTTTTATTAGGCTCACTTCTTTTCCAGAGGGAAGTCTAGCAGACTCAAGTGCACTAATA
CCAAAGGCGCTATTGAATAGGCTCTTTACCTATCAACCATCAACTGATACACCCTCAATCAC
TGAAGAATCTTTAGATTTTAATTCAAAGGGAGAGATTCTTGTTGATCTTTTTGGGGCGGAGTAATGGCTGTAGCTTCTGATCAAGCCACCAGCAT
CTGCAGTCACTGTGACAGAGCAATTCCTTCCACCAATCTTGATCTTCATTTTGCTCACTGCTCCCGGAATCTTGAAAAATGTAAAATCTGTGAGG
ATATGGTTCCTAGAAAGTTTGCGGAGGAACATTTCTTGAGCACTCATGCTCCGGTTGCCTGTTCTTTGTGTAGCGAGACAATGGAACGTGAGATT
TTAGCTGTTCATAGAGGTGAAAATTGCCCAAAAAGGATCGTGACATGCGAGTATTGCGAGTTTCCTTTGCCTGCAATTGATTTATTTGAGCATCA
GGAAGTATGCGGGAACCGGACAGAATTATGCCATCTTTGTAGCAGATACGTTAGACTCCGAGAAAGAGATGTTCATGAGAGTAGATGCAATGGAA
TGATAAGTAATGTTGCAGAATCTTCCAGGAACACACACACAGCTGAAAGAGACCGTGGTCCACCAAGAAGGCAGCCACAAGAATTCTCCAGAAAG
CGGCTTCTGTTCACAATCGCCATAACAGGCATTGCTGTTTTATTAGGCTCACTTCTTTTCCAGAGGGAAGTCTAGCAGACTCAAGTGCACTAATA
CCAAAGGCGCTATTGAATAGGCTCTTTACCTATCAACCATCAACTGATACACCCTCAATCAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378578] | SGN-U574565 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1640 [Download][View] | Facility Assigned ID: TUS35A24.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.979 | Expected Error Rate: 0.0082 | Quality Trim Threshold: 14.5 |
Working
