EST details — SGN-E378584
| Search information |
| Request: 378584 | Match: SGN-E378584 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C180990 | Clone name: TUS-35-M20 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C180990 is on microarray TOM1 spot ID 1-1-5.1.17.21 [Order] [Tomato Microarray Database]
See unigene SGN-U578195 for alternative clones/ESTs which are mapped
| Additional sequencing |
| Clone: SGN-C68191 [cLEN-3-J16] | Trace: SGN-T88093 | EST: SGN-E273497 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C180990 [TUS-35-M20] | Trace: SGN-T193653 | EST: SGN-E392327 | Direction: 5' | Facility: INRA |
| Clone: SGN-C180990 [TUS-35-M20] | Trace: SGN-T193894 | EST: SGN-E392568 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378584 | Length: 770 bp (1122 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378584 [] (trimmed)
ATGACCCGAAGAAAGAACGAAGAGTACTGTGGGGATGGATTGGGGAAACTGACAGTGAATCTGCTGACCTGCAGAAGGGATGGGCATCTGTACAG
AGTATTCCAAGGACAGTGCTTTACGACAAGAAGACAGGGACACATCTACTTCAGTGGCCAGTGGAAGAAATTGAAAGCTTAAGAGTGGGTGATCC
TACTGTTAAGCAAGTCGATCTTCAACCAGGCTCAATTGAGCTACTCCGTGTTGACTCAGCTGCAGAGTTGGATATAGAAGCCTCATTTGAAGTGG
ACAAAGTCGCGCTTCAGGGAATAATTGAAGCAGATCATGTAGGTTTCAGTTGCTCTACTAGTGGAGGTGCTGCTAGCAGAGGCATTTTGGGACCA
TTTGGTGTCATAGTAATTGCTGATCAAACGCTATCTGAGCTAACGCCAGTTTACTTTTACATTTCTAAAGGAGCTGATGGTCGTGCAGAGACTCA
CTTCTGTGCTGATCAAACTAGATCCTCTGAGGCTCCGGGAGTTGGTAAACAAGTTTATGGTAGTTCAGTACCTGTGTTGGACGGTGAAAAACATT
CAATGAGATTATTGGTGGATCACTCAATTGTGGAGAGCTTTGCTCAAGGAGGAAGAACAGTCATAACATCGCGAATTTACCCAACAAAGGCAGTA
AATGGAGCAGCACGACTCTTTGTTTTCAACATGCCACAGGGGCTAGCGTTACTGCCTCCCGTCAGATTTGGTCACTTGAGTCAGCTAATATTTCA
TCCCTTCCTT
AGTATTCCAAGGACAGTGCTTTACGACAAGAAGACAGGGACACATCTACTTCAGTGGCCAGTGGAAGAAATTGAAAGCTTAAGAGTGGGTGATCC
TACTGTTAAGCAAGTCGATCTTCAACCAGGCTCAATTGAGCTACTCCGTGTTGACTCAGCTGCAGAGTTGGATATAGAAGCCTCATTTGAAGTGG
ACAAAGTCGCGCTTCAGGGAATAATTGAAGCAGATCATGTAGGTTTCAGTTGCTCTACTAGTGGAGGTGCTGCTAGCAGAGGCATTTTGGGACCA
TTTGGTGTCATAGTAATTGCTGATCAAACGCTATCTGAGCTAACGCCAGTTTACTTTTACATTTCTAAAGGAGCTGATGGTCGTGCAGAGACTCA
CTTCTGTGCTGATCAAACTAGATCCTCTGAGGCTCCGGGAGTTGGTAAACAAGTTTATGGTAGTTCAGTACCTGTGTTGGACGGTGAAAAACATT
CAATGAGATTATTGGTGGATCACTCAATTGTGGAGAGCTTTGCTCAAGGAGGAAGAACAGTCATAACATCGCGAATTTACCCAACAAAGGCAGTA
AATGGAGCAGCACGACTCTTTGTTTTCAACATGCCACAGGGGCTAGCGTTACTGCCTCCCGTCAGATTTGGTCACTTGAGTCAGCTAATATTTCA
TCCCTTCCTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378584] | SGN-U578195 | Tomato 200607 | Build 2 | 342 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1661 [Download][View] | Facility Assigned ID: TUS35M20.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.995 | Expected Error Rate: 0.0103 | Quality Trim Threshold: 14.5 |
Working
