EST details — SGN-E378607
| Search information |
| Request: 378607 | Match: SGN-E378607 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C182496 | Clone name: TUS-39-L14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182496 is on microarray TOM1 spot ID 1-1-3.4.8.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C96401 [cLEY-15-N18] | Trace: SGN-T119656 | EST: SGN-E307233 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C182496 [TUS-39-L14] | Trace: SGN-T191548 | EST: SGN-E390222 | Direction: 5' | Facility: INRA |
| Clone: SGN-C182496 [TUS-39-L14] | Trace: SGN-T191772 | EST: SGN-E390446 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378607 | Length: 401 bp (1112 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378607 [] (trimmed)
CTGCGGAATTCGGACACGAGAAGAGGAAGAGTCCAGTTGAAGTGAATAGAGAACAAAATTAACCGTCAAGTTACCTTCTCGAAACGTCGATCTGG
TTTGCTGAAGAAAGCCCATGAGATCTCTGTGCTTTGTGATGCTGAGGTTGGTTTGATTGTTTTTTCTACTAAAGGAAAACTCTTTGAATATGCCA
ACGATTCCTGCATGGAGAGGATACTTGAAAGATATGAAAGATACTCATTTGCTGAGAAACAGCTTGTTCCTACTGATCATACCTCCCCGGTAAGC
TGGACCCTTGAACATGCAAAACTTAAGGCCAGACTTGAGGTTCTGCAGAGGAACCAAAGCATTATGTGGGAGAAGATTTGGAGTCCTTAAGTATG
AAGGAACTTCAGAATCTGGAG
TTTGCTGAAGAAAGCCCATGAGATCTCTGTGCTTTGTGATGCTGAGGTTGGTTTGATTGTTTTTTCTACTAAAGGAAAACTCTTTGAATATGCCA
ACGATTCCTGCATGGAGAGGATACTTGAAAGATATGAAAGATACTCATTTGCTGAGAAACAGCTTGTTCCTACTGATCATACCTCCCCGGTAAGC
TGGACCCTTGAACATGCAAAACTTAAGGCCAGACTTGAGGTTCTGCAGAGGAACCAAAGCATTATGTGGGAGAAGATTTGGAGTCCTTAAGTATG
AAGGAACTTCAGAATCTGGAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378607] | SGN-U577950 | Tomato 200607 | Build 2 | 13 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1727 [Download][View] | Facility Assigned ID: TUS39L14.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0037 | Quality Trim Threshold: 14.5 |
Working
