EST details — SGN-E378617
| Search information |
| Request: 378617 | Match: SGN-E378617 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183438 | Clone name: TUS-42-C20 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183438 is on microarray TOM1 spot ID 1-1-5.3.1.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C110306 [cLPT-4-E6] | Trace: SGN-T178218 | EST: SGN-E364817 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183438 [TUS-42-C20] | Trace: SGN-T195016 | EST: SGN-E393690 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183438 [TUS-42-C20] | Trace: SGN-T196011 | EST: SGN-E394685 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183438 [TUS-42-C20] | Trace: SGN-T199653 | EST: SGN-E398327 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183438 [TUS-42-C20] | Trace: SGN-T199653 | EST: SGN-E399234 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183438 [TUS-42-C20] | Trace: SGN-T200280 | EST: SGN-E399233 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378617 | Length: 578 bp (1088 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378617 [] (trimmed)
TAGTTGAGCCACCAACAAGAACAATATCATGAACACCACTCTTGTCAATTTTAGCATCCCTCAAACACTTCTCAACAGGCTCCATACATTTTCTG
AAAAGATCCATGTTGAGCTCCTCAAAACGAGCACGGGTGATCGTTGTGTAGAAATCAATACCCTCATAAAGAGAATCAATTTCAATAGTTGTCTG
AGCAGTGGATGAGAGTGTTCTCTTAGCTCTTTCACATGCAGTTCTTAATCTCCTAAGAGCTCTGGGATTCCCACTGATGTCCTTCTTGTGCTTCC
TCTTGAATTCTTGAACAAAGTGATTAACCATCCTGTTGTCAAAATCTTCTCCACCAAGATGAGTATCACCAGCAGTAGCTTTCACTTCAAAAATA
CCTTCCTCAATAGTAAGTAGTGAGACATCAAACGTACCACCACCCAAGTCAAAAATAAGCACAGTTTTCTCCGCTGTACTACTTGATTTCTTATC
AAGTCCATATGCAATTGCAGCAGCAGTAGGCTCGTTGATAATACGCATAACATTGAGCCCAGAAAATAGTTCAGCATCCTTAGTAGCCTGACGTT
GAGAGTCA
AAAAGATCCATGTTGAGCTCCTCAAAACGAGCACGGGTGATCGTTGTGTAGAAATCAATACCCTCATAAAGAGAATCAATTTCAATAGTTGTCTG
AGCAGTGGATGAGAGTGTTCTCTTAGCTCTTTCACATGCAGTTCTTAATCTCCTAAGAGCTCTGGGATTCCCACTGATGTCCTTCTTGTGCTTCC
TCTTGAATTCTTGAACAAAGTGATTAACCATCCTGTTGTCAAAATCTTCTCCACCAAGATGAGTATCACCAGCAGTAGCTTTCACTTCAAAAATA
CCTTCCTCAATAGTAAGTAGTGAGACATCAAACGTACCACCACCCAAGTCAAAAATAAGCACAGTTTTCTCCGCTGTACTACTTGATTTCTTATC
AAGTCCATATGCAATTGCAGCAGCAGTAGGCTCGTTGATAATACGCATAACATTGAGCCCAGAAAATAGTTCAGCATCCTTAGTAGCCTGACGTT
GAGAGTCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378617] | SGN-U579872 | Tomato 200607 | Build 2 | 71 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1760 [Download][View] | Facility Assigned ID: TUS42C20.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.963 | Expected Error Rate: 0.0082 | Quality Trim Threshold: 14.5 |
Working
