EST details — SGN-E378620
| Search information |
| Request: 378620 | Match: SGN-E378620 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183814 | Clone name: TUS-43-C12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183814 is on microarray TOM1 spot ID 1-1-5.3.19.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C1891 [cLEC-14-D2] | Trace: SGN-T26493 | EST: SGN-E204877 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183814 [TUS-43-C12] | Trace: SGN-T196846 | EST: SGN-E395520 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183814 [TUS-43-C12] | Trace: SGN-T199789 | EST: SGN-E398463 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378620 | Length: 501 bp (1123 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378620 [] (trimmed)
NTTTCATGAATTCGGAACGAGGAAGGTGCTAACAGCTGGGATGGCCCAATTCAGCTAATGTTTGCAGAGGTGCAGATGTTAACGCCAGTAGTGGG
GACGAGAGAAGTGTATTTTGTGAGATATTGCAAACAAATGAGTGCAGCACAGTGGGGGATTGTGGATGTTTCTGTCGACAAAGTTGAAGCCAGCA
TTGACGCTTCTCTCCTTAAATGCAGAAAATTACCCTCAGGATGCATTCTACAAGAACAATCCAATGCACATTGCAAGGTGACGTGGGTGGAACAC
TTGGAGTGCCAAAAAAACATAGTGGACTCTCTGTACCGTGTAACTGTCAACAGCGGCCAAGCTTTTGGCGCAAGGCGCTGGATGGCTACTCTTCA
GCAGCAATGTGAGCGCCTCCTCTTCTTCATGGCAACCAACATTCCTACCAAGGACACTACTGGTGTTGCCACGCTTGCTGGTAGAAAAAGTATAC
TAACATTGGCACAAAAATGACTAGGG
GACGAGAGAAGTGTATTTTGTGAGATATTGCAAACAAATGAGTGCAGCACAGTGGGGGATTGTGGATGTTTCTGTCGACAAAGTTGAAGCCAGCA
TTGACGCTTCTCTCCTTAAATGCAGAAAATTACCCTCAGGATGCATTCTACAAGAACAATCCAATGCACATTGCAAGGTGACGTGGGTGGAACAC
TTGGAGTGCCAAAAAAACATAGTGGACTCTCTGTACCGTGTAACTGTCAACAGCGGCCAAGCTTTTGGCGCAAGGCGCTGGATGGCTACTCTTCA
GCAGCAATGTGAGCGCCTCCTCTTCTTCATGGCAACCAACATTCCTACCAAGGACACTACTGGTGTTGCCACGCTTGCTGGTAGAAAAAGTATAC
TAACATTGGCACAAAAATGACTAGGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378620] | SGN-U575946 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1778 [Download][View] | Facility Assigned ID: TUS43C12.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0069 | Quality Trim Threshold: 14.5 |
Working
