EST details — SGN-E378654
| Search information |
| Request: 378654 | Match: SGN-E378654 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C185902 | Clone name: TUS-48-J12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185902 is on microarray TOM1 spot ID 1-1-5.2.7.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C18099 [cLED-21-P7] | Trace: SGN-T54017 | EST: SGN-E240616 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C185902 [TUS-48-J12] | Trace: SGN-T192416 | EST: SGN-E391090 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378654 | Length: 799 bp (1143 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E378654 [] (trimmed)
AAATGAGTCTCATTCCACTCAACATACTCAAAAATAATAGCTTACCCCATGAATTACTAGTAGGAACAAAGTGTGGACTTACTTGCCCTTTGCTT
AGGAGGAAAAACAATCTCTTCAATATACATCTTATGAAATGCTATAGAGGAAAAGAAACTAAGCTTTTTTTGCAAAGATCTCCATCAGGGAAGAA
GAGGTTCCATAGACGGCAAAAATTGTGCCCATGACAATCAATGCAGCATCAGAAGCAAAACCATACCATCTCAATTCATCTTTGAACGCAATTAA
GTGAAACAAAGAAGGCAACACAAATCCCAAAACAATGCACACACTGCTCCCAACAAGTGACAAGAAATCAGCAAAATTGGGCACCGCCAATGCAA
CAAAAGTCACTGCTAAAACCACAAGCCATCTCAACCACACACAGTACCTGCCTTCCCAGAATCTCCTTTCCATTACTTCATAGACTGGATTCATC
ATAAGGGGGAAAGAGAAAAACAGGTTTATGCAAAGGCCAAGTTGAACAAAGGTGCTGAGCAATCCCTGCCCAAGATTTGTAGTGATTATATCTTT
AGTGTCTTCCCCAAATGCAAAGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGA
TGGCCGCACTTTGGCGGACTATAACATCCAAAAGGAGTCGACCCTGCACTTGGTGCTTANGCTGAGGGGAGGAATGCAGATCTTTGTGAAGACCT
TGACGGGGAAGACATCACTTTGGAGGTGGAGAGTTCTGA
AGGAGGAAAAACAATCTCTTCAATATACATCTTATGAAATGCTATAGAGGAAAAGAAACTAAGCTTTTTTTGCAAAGATCTCCATCAGGGAAGAA
GAGGTTCCATAGACGGCAAAAATTGTGCCCATGACAATCAATGCAGCATCAGAAGCAAAACCATACCATCTCAATTCATCTTTGAACGCAATTAA
GTGAAACAAAGAAGGCAACACAAATCCCAAAACAATGCACACACTGCTCCCAACAAGTGACAAGAAATCAGCAAAATTGGGCACCGCCAATGCAA
CAAAAGTCACTGCTAAAACCACAAGCCATCTCAACCACACACAGTACCTGCCTTCCCAGAATCTCCTTTCCATTACTTCATAGACTGGATTCATC
ATAAGGGGGAAAGAGAAAAACAGGTTTATGCAAAGGCCAAGTTGAACAAAGGTGCTGAGCAATCCCTGCCCAAGATTTGTAGTGATTATATCTTT
AGTGTCTTCCCCAAATGCAAAGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGA
TGGCCGCACTTTGGCGGACTATAACATCCAAAAGGAGTCGACCCTGCACTTGGTGCTTANGCTGAGGGGAGGAATGCAGATCTTTGTGAAGACCT
TGACGGGGAAGACATCACTTTGGAGGTGGAGAGTTCTGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378654] | SGN-U578497 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1909 [Download][View] | Facility Assigned ID: TUS48J12.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0092 | Quality Trim Threshold: 14.5 |
Working
