EST details — SGN-E378662
| Search information |
| Request: 378662 | Match: SGN-E378662 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C173463 | Clone name: TUS-16-D5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C173463 is on microarray TOM1 spot ID 1-1-4.4.18.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C2633 [cLEC-16-K15] | Trace: SGN-T26835 | EST: SGN-E204946 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C173463 [TUS-16-D5] | Trace: SGN-T196780 | EST: SGN-E395454 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378662 | Length: 969 bp (1135 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378662 [] (trimmed)
GTCAACAACTGGCAACTCAGTCTCTTCTTGGGTTACCCCCACTTCCCCCTAGTTTGCTCCCCCAGGCACAGCCTCAGACTCAACTAGCACTATCG
CAAAACCAAGTTTTGCAAAGTCAGCCTAACCCTTCTAGAAATCCTTCCGTCAATGCAACCCAAGTCAATGTGTCAATTAATCCGCCAGTTCAGGT
GGGAACTTCTGTTGCTGTAAAGCAGCAAATGCAGCCTTTTTTCTTACAACAAGCTGGGCCAGTTGCTTCCATGAATTTTACATATAATAGTCAGC
TGGGGACAGAAAAGACAAGCTATCCTCCTCCTCCTTCATCAATGCGTACCCCGTCATTGGAACAAGGTTCTCAGGGAAATCCTTCAGTAGTTTCT
GGTGTCTTGGATAATACGAATAAAGACTCTCGACGACCCCAGGCTCCTAATAATTCATCTTTGATTGCCATACCAGCTTACCCTTCAGGTTTGCC
TGAGGTGAAGAGAGGGGCAGCATATAATCTAGATCCTCTGAGTCGTCCATCGAAAACGACAAGGCTAAATGATGGGATAAGTTATGCCTTACCTG
ATGCAAGTGTATCTACGCCCCAGTCAGGATGCTCGACTCAAGTTTTAGCTGCAGCAGAAATGTCAAACCCTGATAAACAAGCTACTCAGGTACAG
CTTCCCTCGGACGTTGAATCTGCCTTGCTGCAACAAGTTCTGGGTCTCACTCCTGAACAGTTAAGTGCACTGCCACCAGATCAACAGCAGCAGGT
CATTCAGCTCCAACAGATGCTCCGGCAGCCAACATAGCCAAACTTTAATACGTGACGAAGGACCTCAGGTACTTTGCCCACCGAAATATTTCTGC
AGAAGGGCATGGTGTTTTTTGGATCATTTACCATATTGTAAAGTGATGTATTTCCAAGGATTGTAAAATGCCCTTGGGTGTATACATTCATGTAT
GACTGTAAGCAGGCTGTTT
CAAAACCAAGTTTTGCAAAGTCAGCCTAACCCTTCTAGAAATCCTTCCGTCAATGCAACCCAAGTCAATGTGTCAATTAATCCGCCAGTTCAGGT
GGGAACTTCTGTTGCTGTAAAGCAGCAAATGCAGCCTTTTTTCTTACAACAAGCTGGGCCAGTTGCTTCCATGAATTTTACATATAATAGTCAGC
TGGGGACAGAAAAGACAAGCTATCCTCCTCCTCCTTCATCAATGCGTACCCCGTCATTGGAACAAGGTTCTCAGGGAAATCCTTCAGTAGTTTCT
GGTGTCTTGGATAATACGAATAAAGACTCTCGACGACCCCAGGCTCCTAATAATTCATCTTTGATTGCCATACCAGCTTACCCTTCAGGTTTGCC
TGAGGTGAAGAGAGGGGCAGCATATAATCTAGATCCTCTGAGTCGTCCATCGAAAACGACAAGGCTAAATGATGGGATAAGTTATGCCTTACCTG
ATGCAAGTGTATCTACGCCCCAGTCAGGATGCTCGACTCAAGTTTTAGCTGCAGCAGAAATGTCAAACCCTGATAAACAAGCTACTCAGGTACAG
CTTCCCTCGGACGTTGAATCTGCCTTGCTGCAACAAGTTCTGGGTCTCACTCCTGAACAGTTAAGTGCACTGCCACCAGATCAACAGCAGCAGGT
CATTCAGCTCCAACAGATGCTCCGGCAGCCAACATAGCCAAACTTTAATACGTGACGAAGGACCTCAGGTACTTTGCCCACCGAAATATTTCTGC
AGAAGGGCATGGTGTTTTTTGGATCATTTACCATATTGTAAAGTGATGTATTTCCAAGGATTGTAAAATGCCCTTGGGTGTATACATTCATGTAT
GACTGTAAGCAGGCTGTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378662] | SGN-U582161 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1278 [Download][View] | Facility Assigned ID: TUS16D5.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.983 | Expected Error Rate: 0.0054 | Quality Trim Threshold: 14.5 |
Working
