EST details — SGN-E378684
| Search information |
| Request: 378684 | Match: SGN-E378684 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C176963 | Clone name: TUS-25-F1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C176963 is on microarray TOM1 spot ID 1-1-8.2.8.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C28753 [cLEF-49-B9] | Trace: SGN-T62575 | EST: SGN-E249067 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C176963 [TUS-25-F1] | Trace: SGN-T181887 | EST: SGN-E368934 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176963 [TUS-25-F1] | Trace: SGN-T181888 | EST: SGN-E368935 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378684 | Length: 907 bp (1270 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378684 [] (trimmed)
GCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGT
ATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATT
GGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAG
ATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACG
GAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGG
AAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTG
GATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGT
TTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGT
TCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAAT
TTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCCACAGGGATGATCTT
ATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATT
GGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAG
ATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACG
GAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGG
AAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTG
GATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGT
TTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGT
TCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAAT
TTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCCACAGGGATGATCTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378684] | SGN-U572742 | Tomato 200607 | Build 2 | 63 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1431 [Download][View] | Facility Assigned ID: TUS25F1.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0041 | Quality Trim Threshold: 14.5 |
Working
