EST details — SGN-E378698
| Search information |
| Request: 378698 | Match: SGN-E378698 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C179336 | Clone name: TUS-31-H22 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179336 is on microarray TOM1 spot ID 1-1-3.4.2.16 [Order] [Tomato Microarray Database]
See unigene SGN-U578975 for alternative clones/ESTs which are mapped
| Additional sequencing |
| Clone: SGN-C77382 [cLES-20-M15] | Trace: SGN-T102189 | EST: SGN-E290510 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C179336 [TUS-31-H22] | Trace: SGN-T185656 | EST: SGN-E373518 | Direction: 3' | Facility: INRA |
| Clone: SGN-C179336 [TUS-31-H22] | Trace: SGN-T185657 | EST: SGN-E373519 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378698 | Length: 724 bp (1244 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378698 [] (trimmed)
CCTTGAAGTGTCAAATTAAGGTTACATTTTTTTACAAGATGAAAATTTAATATAATATACGTAAAACCCCTCCTCATGCATGTTGCTTAATTAAA
AAAAAAACCCAAAGGGGTCGAAAATGGTAGTGTGAAGCGGGCCACTCAAGTGGGTAGCCCAGTTGTTAAGGGGGCCTTTTCCAGTAGCAGCAGCT
TGGACAGCAAAGCCCAAGAACGCAACCATGGCGAGCCGAGCATGCTTGATCTCAGCGAGTTGAAGGGGGGCTTTTTTCCCCGGGTCAGCACCAAG
GCCCAATGGATCAAAAAATGATCCACCTGGGAAAAGCCTTTTTTCTGGGTCAAGCTCGGCGTTCCTTTGAAATTCGATGTATCCAATGACAAGAA
CCTCAATCCAAATCAATGTTGTAATGGAAAATGGGAGTGGTTGCCCTAAGTAGGATGATCCCTCAACCAACTCAACCTTTCCGGGATCTTGCCAT
GTAATACCAGGGAGCCACTCAACAGTAGAGTGCACCAAGAGTAGCCAACATAGCCCATCTTCCAGGGATCAATTCACATTCTCTGAACCTCTGTA
GTCCAAAAACCTCACTGTAAGGCTGAAACGGAGTTGATTTCACATCAGCAACTTCAGTTCTCGTTCCAATAATGTCACCAGCCAAATTCTTCGCC
AAATTCTGGTCCAGCGAATCCAAATCAAATTGCAAATACTCCGCCGGTTTCCCCAAACC
AAAAAAACCCAAAGGGGTCGAAAATGGTAGTGTGAAGCGGGCCACTCAAGTGGGTAGCCCAGTTGTTAAGGGGGCCTTTTCCAGTAGCAGCAGCT
TGGACAGCAAAGCCCAAGAACGCAACCATGGCGAGCCGAGCATGCTTGATCTCAGCGAGTTGAAGGGGGGCTTTTTTCCCCGGGTCAGCACCAAG
GCCCAATGGATCAAAAAATGATCCACCTGGGAAAAGCCTTTTTTCTGGGTCAAGCTCGGCGTTCCTTTGAAATTCGATGTATCCAATGACAAGAA
CCTCAATCCAAATCAATGTTGTAATGGAAAATGGGAGTGGTTGCCCTAAGTAGGATGATCCCTCAACCAACTCAACCTTTCCGGGATCTTGCCAT
GTAATACCAGGGAGCCACTCAACAGTAGAGTGCACCAAGAGTAGCCAACATAGCCCATCTTCCAGGGATCAATTCACATTCTCTGAACCTCTGTA
GTCCAAAAACCTCACTGTAAGGCTGAAACGGAGTTGATTTCACATCAGCAACTTCAGTTCTCGTTCCAATAATGTCACCAGCCAAATTCTTCGCC
AAATTCTGGTCCAGCGAATCCAAATCAAATTGCAAATACTCCGCCGGTTTCCCCAAACC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378698] | SGN-U578975 | Tomato 200607 | Build 2 | 245 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1527 [Download][View] | Facility Assigned ID: TUS31H22.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.970 | Expected Error Rate: 0.0168 | Quality Trim Threshold: 20.5 |
Working
