EST details — SGN-E378702
| Search information |
| Request: 378702 | Match: SGN-E378702 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C179843 | Clone name: TUS-32-N1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179843 is on microarray TOM1 spot ID 1-1-8.2.1.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C86724 [cLET-44-B12] | Trace: SGN-T111353 | EST: SGN-E298717 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C179843 [TUS-32-N1] | Trace: SGN-T186092 | EST: SGN-E372939 | Direction: 3' | Facility: INRA |
| Clone: SGN-C179843 [TUS-32-N1] | Trace: SGN-T186093 | EST: SGN-E372940 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378702 | Length: 598 bp (1156 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378702 [] (trimmed)
TGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTG
AGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTG
GGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGG
TTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTT
GAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAGGTTGTTACTTTGTGCT
TCATTTTATCTGTGTAACTTGCTTTGACAGAATTTTGTATCTTGAATTTCAGAGATGCTGCTTTCCCAATTGTCTCTAGGTGTATTTCGAGANTA
TGTTTCAGCGAAATAGAAATAACTATAT
AGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTG
GGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGG
TTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTT
GAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAGGTTGTTACTTTGTGCT
TCATTTTATCTGTGTAACTTGCTTTGACAGAATTTTGTATCTTGAATTTCAGAGATGCTGCTTTCCCAATTGTCTCTAGGTGTATTTCGAGANTA
TGTTTCAGCGAAATAGAAATAACTATAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378702] | SGN-U582211 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1561 [Download][View] | Facility Assigned ID: TUS32N1.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.954 | Expected Error Rate: 0.0150 | Quality Trim Threshold: 12.5 |
Working
