EST details — SGN-E378708
| Search information |
| Request: 378708 | Match: SGN-E378708 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C180325 | Clone name: TUS-34-B3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C180325 is on microarray TOM1 spot ID 1-1-6.2.19.4 [Order] [Tomato Microarray Database]
See unigene SGN-U578456 for alternative clones/ESTs which are mapped
| Additional sequencing |
| Clone: SGN-C45431 [cLEG-7-L14] | Trace: SGN-T65123 | EST: SGN-E250676 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C180325 [TUS-34-B3] | Trace: SGN-T187114 | EST: SGN-E375212 | Direction: 3' | Facility: INRA |
| Clone: SGN-C180325 [TUS-34-B3] | Trace: SGN-T187115 | EST: SGN-E375213 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378708 | Length: 443 bp (1204 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378708 [] (trimmed)
GTTAGACCAATTATTCTGTGACGTATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAA
CTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTA
AGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGA
AATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAATCGTGATGTA
AATGTTCAATCTATGGAGATGCCGATTATGGCTCCCTTTTGTGTAGCCTTCTGGGAGTGTATT
CTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTA
AGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGA
AATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAATCGTGATGTA
AATGTTCAATCTATGGAGATGCCGATTATGGCTCCCTTTTGTGTAGCCTTCTGGGAGTGTATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378708] | SGN-U578456 | Tomato 200607 | Build 2 | 466 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1621 [Download][View] | Facility Assigned ID: TUS34B3.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.950 | Expected Error Rate: 0.0048 | Quality Trim Threshold: 14.5 |
Working
