EST details — SGN-E378753
| Search information |
| Request: 378753 | Match: SGN-E378753 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C175541 | Clone name: TUS-21-J19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175541 is on microarray TOM1 spot ID 1-1-6.2.13.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C15446 [cLED-11-P13] | Trace: SGN-T51552 | EST: SGN-E235542 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175541 [TUS-21-J19] | Trace: SGN-T190603 | EST: SGN-E377841 | Direction: 3' | Facility: INRA |
| Clone: SGN-C175541 [TUS-21-J19] | Trace: SGN-T190604 | EST: SGN-E377842 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378753 | Length: 889 bp (1261 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378753 [] (trimmed)
TTTCCAGGTAACTTAAGCTAATTACAAGATTATATCGTTCCATTTTCTCAAGTGTTTTTTTTAATGGGAAGAGAAATAGTGAAAGCAGAATCAGT
TGAGGAAACAAGCTTCAACTGGTCATCAGCATCATCAGATTCATCATCCACAACATCTTCTTATGATGAAGAAAACAGAATGCCTCTGTTAGCAT
TGAATCATGTTTCTTATGTCTGCAAATCTGTTCCTAAATCTGCCCAATTTTATGAACAAGTCCTCGGTTTCGTACTAATCAAACGTCCATCCTCC
TTTGATTTTGATGGTGCTTGGTTATTCAACCATGGAATTGGAATTCATTTGTTAGGAAAAGAAGATGTGCAATCAAAAAGGGGAAAAATTAACCC
AAAAGATAATCACATTTCATTTCAGTGCACAGATATGGATCTTATTATTCAGAGATTGAATGATATGAATGTTGAATATGTAACTGCTACTGTTA
AAGAAGGTGGAGTTACAGTGGATCAACTCTTTTTTCATGACCCAGATGGCAATATGATTGAAATTTGCAATTGTCAGAATTTACCTGTTCTTCCA
CTTTCTTCTTGCCCACTCAAAAAAATGTCAAGTCCAACTTTCAACCAAACAATGTCAGATTCCTTTTATGGAAATGGAAAAACAAATACAAAGAT
GAATTGTTCAGGAGAAGTTGAATCTCTTATGATGGAAAATTTAGCTTTGGATATGATGGACATTTCTTTTTGAGTGATTCATGTGGAAGAAAAAG
AAAAGTGAATTTTGCTCATCATTATTAGCTCTTTTATTTATTTTTTTACCAACCCAATATAACATAAAAAATCCTTTTTGTAATATTATTATTAT
TATGAATTAGAAGGAAGTGAAGAGAGGGGTGATG
TGAGGAAACAAGCTTCAACTGGTCATCAGCATCATCAGATTCATCATCCACAACATCTTCTTATGATGAAGAAAACAGAATGCCTCTGTTAGCAT
TGAATCATGTTTCTTATGTCTGCAAATCTGTTCCTAAATCTGCCCAATTTTATGAACAAGTCCTCGGTTTCGTACTAATCAAACGTCCATCCTCC
TTTGATTTTGATGGTGCTTGGTTATTCAACCATGGAATTGGAATTCATTTGTTAGGAAAAGAAGATGTGCAATCAAAAAGGGGAAAAATTAACCC
AAAAGATAATCACATTTCATTTCAGTGCACAGATATGGATCTTATTATTCAGAGATTGAATGATATGAATGTTGAATATGTAACTGCTACTGTTA
AAGAAGGTGGAGTTACAGTGGATCAACTCTTTTTTCATGACCCAGATGGCAATATGATTGAAATTTGCAATTGTCAGAATTTACCTGTTCTTCCA
CTTTCTTCTTGCCCACTCAAAAAAATGTCAAGTCCAACTTTCAACCAAACAATGTCAGATTCCTTTTATGGAAATGGAAAAACAAATACAAAGAT
GAATTGTTCAGGAGAAGTTGAATCTCTTATGATGGAAAATTTAGCTTTGGATATGATGGACATTTCTTTTTGAGTGATTCATGTGGAAGAAAAAG
AAAAGTGAATTTTGCTCATCATTATTAGCTCTTTTATTTATTTTTTTACCAACCCAATATAACATAAAAAATCCTTTTTGTAATATTATTATTAT
TATGAATTAGAAGGAAGTGAAGAGAGGGGTGATG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378753] | SGN-U573554 | Tomato 200607 | Build 2 | 74 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1374 [Download][View] | Facility Assigned ID: TUS21J19.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.933 | Expected Error Rate: 0.0118 | Quality Trim Threshold: 12.5 |
Working
