EST details — SGN-E378759
| Search information |
| Request: 378759 | Match: SGN-E378759 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C177085 | Clone name: TUS-25-K3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C177085 is on microarray TOM1 spot ID 1-1-6.3.8.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C177085 [TUS-25-K3] | Trace: SGN-T181602 | EST: SGN-E369740 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177085 [TUS-25-K3] | Trace: SGN-T181603 | EST: SGN-E369741 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378759 | Length: 729 bp (1225 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378759 [] (trimmed)
GTTTTGTATATAAATATCTCCTCAACTGGCTAATTCTCAGGAAATTCTGGAAGAAACTAGAAATAAAGGGGTGGTGCTCGCCCTATATGAAGCTT
TGAGCTCACGTGACGTTGACAAGGTCCAGAAACTTCTGGCCTCTGACCTTGAGTGGTGGTTCCATGGTCCACCTTCACATCAATTTTTGATGCGC
ATACTAACTGGTACTGCCAACTCCGATCACTATTTCTTCAAATTCATTCCTCAAAGTGTTGACGCCTTTGGATCTACTGTCCTTGTCGAAGGTTG
CGATCCTGATCACTCAATTACTTGGGTTCACGCTTGGACTGTTGATGATGGGATAATTACTCAGGTTAGGGAGTATTTCAATACCTCTCTCACAG
TCACTCGACTTGACAATAGTAATAATAATAATAATTGCCCTTCATCGGATTTGTCTTCCATTGCTGCTACACGGCATTGCCCTTCTCTTTGGGAG
AGTAGTTTACCTAATCGGGTGGGTAAGTCGGTTCCGGGTCTTGTTCTCGCTCTCTGAGTTCCGCCAGGATGTAAGTTTTTAACGGTTGATTTGGG
GGTTTTCGTCGCATTGTTTTGATTTTATTATCTGCAATTTTAATTTGGGACCATGAGGAATGGGATATCCTTGTACTGGTTATGGTGTTTTAATA
TATTATGTGATACGCGATGTATTTGGTTTGCAATAAAAGCACTTGTTGGTTTTTTTGAAAAAAA
TGAGCTCACGTGACGTTGACAAGGTCCAGAAACTTCTGGCCTCTGACCTTGAGTGGTGGTTCCATGGTCCACCTTCACATCAATTTTTGATGCGC
ATACTAACTGGTACTGCCAACTCCGATCACTATTTCTTCAAATTCATTCCTCAAAGTGTTGACGCCTTTGGATCTACTGTCCTTGTCGAAGGTTG
CGATCCTGATCACTCAATTACTTGGGTTCACGCTTGGACTGTTGATGATGGGATAATTACTCAGGTTAGGGAGTATTTCAATACCTCTCTCACAG
TCACTCGACTTGACAATAGTAATAATAATAATAATTGCCCTTCATCGGATTTGTCTTCCATTGCTGCTACACGGCATTGCCCTTCTCTTTGGGAG
AGTAGTTTACCTAATCGGGTGGGTAAGTCGGTTCCGGGTCTTGTTCTCGCTCTCTGAGTTCCGCCAGGATGTAAGTTTTTAACGGTTGATTTGGG
GGTTTTCGTCGCATTGTTTTGATTTTATTATCTGCAATTTTAATTTGGGACCATGAGGAATGGGATATCCTTGTACTGGTTATGGTGTTTTAATA
TATTATGTGATACGCGATGTATTTGGTTTGCAATAAAAGCACTTGTTGGTTTTTTTGAAAAAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378759] | SGN-U578458 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1436 [Download][View] | Facility Assigned ID: TUS25K3.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0006 | Quality Trim Threshold: 12.5 |
Working
