EST details — SGN-E378768
| Search information |
| Request: 378768 | Match: SGN-E378768 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C179037 | Clone name: TUS-30-L11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179037 is on microarray TOM1 spot ID 1-1-6.4.2.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C78612 [cLES-6-D2] | Trace: SGN-T98495 | EST: SGN-E287043 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C179037 [TUS-30-L11] | Trace: SGN-T184791 | EST: SGN-E372351 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378768 | Length: 912 bp (1176 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378768 [] (trimmed)
CTTCAGGAACTTGTTTGCAGATATGGGTTCATTTTTCATAAACTTGACACTCATATTGGCTTTGCTATCCACTAGTTTTTCGTACAATTCATGGG
CTGTAGATGTAGATACAAATTTGGGATCTGAAACTGAGTTACTAACTCGGGAGCTTATGGAATCGGCGAGGCAACCCGAGTTCTTGGATTGGTTG
ACAAGGACGAGAAGGAGAATCCATGAGTACCCGGAATTGTCTTTTCAGGAATACCAAACGAGTCAATTTATCCGAAATGAGTTGGATTCACTTGG
GATCAAGTATTTGTGGCCAGTGGCTAAAACTGGTGTGGTGGGAACTATTGGGTCTGGTGCTCAACCTTGGTTTGGTTTGAGAGCTGACATGGATG
CTCTCCCCATTCAGGAATTGGTAGATTGGGAGTGCAAAAGCAAGATCGATGGAAAAATGCATGCTTGTGGCCACGATGCTCATGTTACCATGTTA
CTTGGAGCAGCTAGACTGATACAGAACAGAAGGGACAAGTTAAAGAAGAAGGATATGCTGGTGCCTCATATATGTTAGAAGAAGGAGCTTTAGAT
GGGTTTCAAGCAATGTTTGGCTTGCATGTCTGGCCATTTATGCCCGTTGGCACTATTGCTTCAAAACCTGGTCCTATTATGGCTGGCTCTAGCAG
GTTTACTGTAATAATGCAAGGGAAAGGCGGTCATGCAGCTACACCACATAACACAAGGGATCCAATATTGGCTGTTTCTATGACAGTTCTTGCAC
TACAGCAACTTGTATCTCGAGAAACTGATCCTTTAGAGCCTAGGGTGCTCACTGTTGCATTTGTAGATGGTGGTCAGCCGGGTATGTAATCCCGA
AAGTGTAGGTTTGGTGGCACCTTCCGNTCATGACATTAGAAGATATCCTATCTTAGC
CTGTAGATGTAGATACAAATTTGGGATCTGAAACTGAGTTACTAACTCGGGAGCTTATGGAATCGGCGAGGCAACCCGAGTTCTTGGATTGGTTG
ACAAGGACGAGAAGGAGAATCCATGAGTACCCGGAATTGTCTTTTCAGGAATACCAAACGAGTCAATTTATCCGAAATGAGTTGGATTCACTTGG
GATCAAGTATTTGTGGCCAGTGGCTAAAACTGGTGTGGTGGGAACTATTGGGTCTGGTGCTCAACCTTGGTTTGGTTTGAGAGCTGACATGGATG
CTCTCCCCATTCAGGAATTGGTAGATTGGGAGTGCAAAAGCAAGATCGATGGAAAAATGCATGCTTGTGGCCACGATGCTCATGTTACCATGTTA
CTTGGAGCAGCTAGACTGATACAGAACAGAAGGGACAAGTTAAAGAAGAAGGATATGCTGGTGCCTCATATATGTTAGAAGAAGGAGCTTTAGAT
GGGTTTCAAGCAATGTTTGGCTTGCATGTCTGGCCATTTATGCCCGTTGGCACTATTGCTTCAAAACCTGGTCCTATTATGGCTGGCTCTAGCAG
GTTTACTGTAATAATGCAAGGGAAAGGCGGTCATGCAGCTACACCACATAACACAAGGGATCCAATATTGGCTGTTTCTATGACAGTTCTTGCAC
TACAGCAACTTGTATCTCGAGAAACTGATCCTTTAGAGCCTAGGGTGCTCACTGTTGCATTTGTAGATGGTGGTCAGCCGGGTATGTAATCCCGA
AAGTGTAGGTTTGGTGGCACCTTCCGNTCATGACATTAGAAGATATCCTATCTTAGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378768] | SGN-U564508 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1519 [Download][View] | Facility Assigned ID: TUS30L11.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.982 | Expected Error Rate: 0.0069 | Quality Trim Threshold: 14.5 |
Working
