EST details — SGN-E378770
| Search information |
| Request: 378770 | Match: SGN-E378770 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C179319 | Clone name: TUS-31-H5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179319 is on microarray TOM1 spot ID 1-1-4.4.2.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C77338 [cLES-20-K13] | Trace: SGN-T102184 | EST: SGN-E290505 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C179319 [TUS-31-H5] | Trace: SGN-T185474 | EST: SGN-E373336 | Direction: 3' | Facility: INRA |
| Clone: SGN-C179319 [TUS-31-H5] | Trace: SGN-T185475 | EST: SGN-E373337 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378770 | Length: 899 bp (1148 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378770 [] (trimmed)
TCCACCAGGAATTCGGCACCAGGGATGATGAGCAAATCGGGTAATCAATAATAGTTTATCTGATAGCTGGACCAGGTAATATTGAACTGAAGGCT
GCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCAC
TAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCA
GAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAA
GGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAG
TTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAAC
TTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTAT
GGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGG
AGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAACTGCATATATATTGGCG
CAAGTTTTCCTATTTTTATTCTATTTCTATATTAATAGGATTTT
GCAGAAATATGTCATGTTCGGACCAATAAAGCAAGTGTGGCTCTACTGCGTTTGGTTTGGGAGTAGCAGGCCCTGGAAAACCCAAAATTCACCAC
TAGCTGTAACATAATAGAATTTACCCTTATAATAATTGATACCCATGACAGCACCCGAATTCTCCATCTCAATATTTGTTCAACTGAGATCTCCA
GAAAGCCAAGCGAGTAATATTTGCGTGATAGTTAACCACGAGTACATAATCTGAGGTAACACAAGGACTTGCAGATAAGATAGCATGCTCTAGAA
GGTTCCAGAACACTTCATCTCCGAGACCATTAGAAGCCATTAAGTTATCTCGTGAAGGAAGTTGAATTTGGGTACGAGACAAATGATGCAACAAG
TTCATCTCTCCGGTAGTATCATCCATGGTGCAGAGCCATCCTTCCGAGGGAAAACAATATCGTTGTCTAGCTTCGGGGAGAAACAAAGGAGTAAC
TTTCTGCTTGATAAGAGAGTAAAATTCTCGGCAATCATCATGTTTGTCAGCCAACATAAGTAAAGGAGTTTTGGTAAAAAAGATATCAAATTTAT
GGTTAGGGGTAGTAGCAATTTGCCAAGAGGTACAAACACAAGTAAAGAATAGGAAATCTTTAGGTGATTCAATACGATTTGCAATCATAGCAAGG
AGATCCATCGATAATTCTGCCCAGCCGCCTGCCATGAAGAAGAACGAGTTGTAGTTCTATTTTTTTTTTTGGTTACAACTGCATATATATTGGCG
CAAGTTTTCCTATTTTTATTCTATTTCTATATTAATAGGATTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378770] | SGN-U565026 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1528 [Download][View] | Facility Assigned ID: TUS31H5.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0059 | Quality Trim Threshold: 14.5 |
Working
