EST details — SGN-E378945
| Search information |
| Request: 378945 | Match: SGN-E378945 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C167893 | Clone name: TUS-1-L3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C167893 [TUS-1-L3] | Trace: SGN-T39 | EST: SGN-E379472 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E378945 | Length: 771 bp (792 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E378945 [] (trimmed)
AAATGGTCCATATCTTATTTTCGTCAGCACCACGACAACTGTATTTTCTCCTTACAGAGATGCAAAAAAAGGAAAAGACAAGGATATACTACACT
AGGGAAATTTCTCTGACTAAGAAGAATAAATGTATAAATATCTACAACCAATTCTAAGCCAGACTTTGAAGATCATCAGGTTGCCACATCCGAAT
GCCTGAATTCTGCAATGCCGCAAGAATAAAAATGATTCCACCGGTGGGCAACAATAATCAAAGAAGCAGCAACTATCTAGCATAAATAGTCTTGG
GCCTCTTGGCACAACTCAGCAAGGCAGAATAGATTGCCAGAGTCAGCGATTGACGAGACCCTGCAGTGCCAGTTCATCAAAACAATGGAATCGTC
CACCTTCATGCCTTGGAACTAGTCCGAACAAAGTTAAGGCGAGTGAGATAATTGCTTTCAGCGAAATCATGTAATGTGCGTGGTGCTCGTGCTCC
ATCATGACCCAGTTTACCATATTCTTCCTTCAACAACCTCCTACCTTCATCAGCCTCCTGTAAGAACTTCATCATTTGCTCCTCAATTGTGCCAC
TCATCGCCAGTGTTTCCACGAGAATAGGACGTGTAGCACCCATCCGATGAGCACGACTGATCACCTGTTCCTCCATACTTTTGTCCCAAATTGGC
TCCATTAAATAAACATGTGTCACAAAGCTCAGATCAAGACCTAAAGCTGCACTTCCGTCCATTAAAAGAGCCATGCAGTCAACATCATGCTGAAA
TGTTAACAGTG
AGGGAAATTTCTCTGACTAAGAAGAATAAATGTATAAATATCTACAACCAATTCTAAGCCAGACTTTGAAGATCATCAGGTTGCCACATCCGAAT
GCCTGAATTCTGCAATGCCGCAAGAATAAAAATGATTCCACCGGTGGGCAACAATAATCAAAGAAGCAGCAACTATCTAGCATAAATAGTCTTGG
GCCTCTTGGCACAACTCAGCAAGGCAGAATAGATTGCCAGAGTCAGCGATTGACGAGACCCTGCAGTGCCAGTTCATCAAAACAATGGAATCGTC
CACCTTCATGCCTTGGAACTAGTCCGAACAAAGTTAAGGCGAGTGAGATAATTGCTTTCAGCGAAATCATGTAATGTGCGTGGTGCTCGTGCTCC
ATCATGACCCAGTTTACCATATTCTTCCTTCAACAACCTCCTACCTTCATCAGCCTCCTGTAAGAACTTCATCATTTGCTCCTCAATTGTGCCAC
TCATCGCCAGTGTTTCCACGAGAATAGGACGTGTAGCACCCATCCGATGAGCACGACTGATCACCTGTTCCTCCATACTTTTGTCCCAAATTGGC
TCCATTAAATAAACATGTGTCACAAAGCTCAGATCAAGACCTAAAGCTGCACTTCCGTCCATTAAAAGAGCCATGCAGTCAACATCATGCTGAAA
TGTTAACAGTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378945] | SGN-U584194 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T513 [Download][View] | Facility Assigned ID: 231_D03_TUS01L3.Td_025.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.972 | Expected Error Rate: 0.0021 | Quality Trim Threshold: 20.5 |
Working
