EST details — SGN-E379628
| Search information |
| Request: 379628 | Match: SGN-E379628 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C167751 | Clone name: TUS-1-F5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C1000 [cLEC-10-G22] | Trace: SGN-T24705 | EST: SGN-E201118 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C167751 [TUS-1-F5] | Trace: SGN-T1156 | EST: SGN-E378987 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E379628 | Length: 768 bp (809 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E379628 [] (trimmed)
TCGTCGAAAACACATTCCACAAGCAATCATAAGTAACTACAGCTAAGAGTACTTGACAAAACTGCATTTTGTCACTGAAATCAGAAACACAAACA
TCTTCTGGTGTACATTACAAGCAAAAGTTCAAGCTTTATCGCGTTTTAACATGAACAATAACGCGTTTACTGCAGAAAATCTCGAGGATCAGTAA
CATGGCCAGTTAATGCAGATGCTGCAGCTGTATATGGAGATGCAAGATAAATTTGACCTTCCTTGTGGCCCATTCGCCCCGGGAAGTTCCTGTTT
GTGGTTGAGACACATACCTGAGGTTCGTTCAACCGAGCATGAGTATCTCTAGGACCACCCATACAAGCACCACAACTAGGACTTGCTGGTGTATC
GCAGCCAGCATCCTCGAAAATCTGTGAACATGTTTTGCCACCAGATTCTGGAACTGGGATAGTATATAAATCCATCCAGACCTTCTGCGTAGCAG
GGACGAGAAATGTTGGAACTTTGACCTTCTTTCCTGATGCTAGAAAAACTTTGGCAGCAGCCATGAAGTCTTCTGTTTTCCCACCGGTACAAGAT
CCAATATATACTCTGTCAATCTTAACATCTTCGCATTCTCTTGCCAAAGCACGATTGCCAGGAGAATGAGGCTTTGCTACTAAGGGCTCCAACTT
TGAGATGTCGAAATGATACTTAGCAAGAAACCTGGCTTGCTCATCACTGTAGACAGGTTCATAATGCACAGTAGTCTTGTCCTTAANGGTAGTCA
TATGTTGT
TCTTCTGGTGTACATTACAAGCAAAAGTTCAAGCTTTATCGCGTTTTAACATGAACAATAACGCGTTTACTGCAGAAAATCTCGAGGATCAGTAA
CATGGCCAGTTAATGCAGATGCTGCAGCTGTATATGGAGATGCAAGATAAATTTGACCTTCCTTGTGGCCCATTCGCCCCGGGAAGTTCCTGTTT
GTGGTTGAGACACATACCTGAGGTTCGTTCAACCGAGCATGAGTATCTCTAGGACCACCCATACAAGCACCACAACTAGGACTTGCTGGTGTATC
GCAGCCAGCATCCTCGAAAATCTGTGAACATGTTTTGCCACCAGATTCTGGAACTGGGATAGTATATAAATCCATCCAGACCTTCTGCGTAGCAG
GGACGAGAAATGTTGGAACTTTGACCTTCTTTCCTGATGCTAGAAAAACTTTGGCAGCAGCCATGAAGTCTTCTGTTTTCCCACCGGTACAAGAT
CCAATATATACTCTGTCAATCTTAACATCTTCGCATTCTCTTGCCAAAGCACGATTGCCAGGAGAATGAGGCTTTGCTACTAAGGGCTCCAACTT
TGAGATGTCGAAATGATACTTAGCAAGAAACCTGGCTTGCTCATCACTGTAGACAGGTTCATAATGCACAGTAGTCTTGTCCTTAANGGTAGTCA
TATGTTGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E379628] | SGN-U576272 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T214 [Download][View] | Facility Assigned ID: 227_F05_TUS01F5.Td_045.ab1 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.985 | Expected Error Rate: 0.0026 | Quality Trim Threshold: 20.5 |
Working
