EST details — SGN-E390362

Search information 
Request: 390362Match: SGN-E390362
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183007Clone name: TUS-41-A21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183007 is on microarray TOM1 spot ID 1-1-4.1.3.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C1668 [cLEC-13-I11] Trace: SGN-T26070 EST: SGN-E204317 Direction: 5' Facility: TIGR
Clone: SGN-C183007 [TUS-41-A21] Trace: SGN-T1753 EST: SGN-E378310 Direction: 5' Facility: Giov. Lab
Clone: SGN-C183007 [TUS-41-A21] Trace: SGN-T191467 EST: SGN-E390141 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E390362Length: 617 bp (874 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390362 [] (trimmed) AGCTACAAGGAGCCAAACCCCACCTCAACAAATCATTTAGTGACCAACAAAAAATGTCAAAAAACGGCAGCAGTTGTACATAACATCAAAACCCT
CTGAAAAAACAGGTTTTTTGAAAGTCGTTATCAAATAATATAACTTGACAAAACATCCGTATGGCCAAAATAAATCACAACAATTTAATGACAAA
ATCTTTCCACTGCTACTATAGGTCTGATCTTTTAAAATGTATAAAGGGGGAAACCCAAAACGTAATACAAACCCAACAAAGTCTCTCTCTTCCTT
CCAAATCTTCGAGCATCAAACCATCAACTTAATTCATGATGCCCTTGGCACATCAAATTTGTCCGTCTCCATTGGCTCCCCAGCAGGGGGGGCCC
CCCTGTCACCACTATCACCCTCAGTAACATTAGGACTCCCTGCACCCGTGAGGTTGTTGCTCACCTCCTTGAAAAAATTGAGGTGACGGTGTTTC
AGGAGTTGCTGGCTTAACTGGCTTAGGCTTTGTCATTATAGGCCTACAAACCCTATCAAGTGCTTCTGCTTTCTTTCAAACATCAGCTGACAAAA
AAACAGGGTTGGCATATTTTGGAAAAACATCCTGCTGCTGTTTTTTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390362] SGN-U576568 Tomato 200607 Build 2 14 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191688 [Download][View] Facility Assigned ID: FA0AAD29AA11FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.948 Expected Error Rate: 0.0164 Quality Trim Threshold: 12.5