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EST details — SGN-E390380

Search information 
Request: 390380Match: SGN-E390380
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183187Clone name: TUS-41-I9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183187 is on microarray TOM1 spot ID 1-1-8.1.3.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C67886 [cLEN-21-P12] Trace: SGN-T91607 EST: SGN-E276348 Direction: 5' Facility: TIGR
Clone: SGN-C183187 [TUS-41-I9] Trace: SGN-T191496 EST: SGN-E390170 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390380Length: 553 bp (911 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390380 [] (trimmed) GGAACAAAAAATGCCCCAATACCCATATTACATTTTTAGGGGTACCCCAATGAAGCCTACCCTTGCTTTCTTTCCAGAAGGGTCCAACCCTAATC
CTAAAAAAACTTTTATCCAACCAACTTTTAAAATTTACTGAATACCCAACTCCAAACCCGGGGCAGTTCTTGACCCCTTAAATCCCACTAACTGC
CAAAAAAAAATCCGACAGCCAAATCCGAAACTAAAATCCCCCCCCCAAACGGAAAAAAACCGCCCCCGTTCCCAAATTGGGGGCCACAGCATATT
CCGCCCCTACTAAACCCAATTTTACCCCCACCCCCTATGAGGAGCCCTGGCCCCTCCCTCCATAAACCCCCGTTGGGTTTCCCTTGACATCTTTC
CAACTCCCCAAATCATTTCCCTGCCCCGCAAATGCCTACCCCTGTGTGTTTCCAACAGGGATCCCCCGCTCCACCCCCAACTCCACCATATTTCT
GGCTGCCCCTATCCCTCCCCTATTGGAACCCCCGACCGAATAAAGTCCCCCCAGTGTGAAAACCTCAAAACTGGGAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390380] SGN-U598337 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191706 [Download][View] Facility Assigned ID: FA0AAD29AE05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.900 Expected Error Rate: 0.0291 Quality Trim Threshold: 14.5