EST details — SGN-E390456

Search information 
Request: 390456Match: SGN-E390456
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182603Clone name: TUS-40-A1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182603 is on microarray TOM1 spot ID 1-1-8.1.6.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C113100 [cTOA-1-E13] Trace: SGN-T124161 EST: SGN-E310238 Direction: 5' Facility: TIGR
Clone: SGN-C182603 [TUS-40-A1] Trace: SGN-T1737 EST: SGN-E378445 Direction: 5' Facility: Giov. Lab
Clone: SGN-C182603 [TUS-40-A1] Trace: SGN-T191561 EST: SGN-E390235 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E390456Length: 663 bp (874 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390456 [] (trimmed) AAAAAAAAACAAGGTCCCTCTATAATTTACTGTATTGGGAAAAAAATCATGTTTGGCAACTCAAATTATGAAGTTACAGGTTACATTAAAGAAAA
CTAAAAAAAAAGTAATTTCAAGTTATAAATTACCTTCCCCTAAACAGATATAATTTGCTAAGCCTATCTACAAAATCCATCGTTCATAAAATTAA
TCAGGGGGGAGGTATATGAATTTCCTACAACTTTGGAATATTCCTTCCCCCCCCGCATGAAGCTGCTTTGAAACAAAAAAATCTCAGGAAACCCC
AAGAAGTTATTAACCATGTCCATTACTTACTGCTCAAATTTGATCGGGTTTTCTCTACCTGATTCTTGGTCTTGGGGACTACTACTTTGCCCATC
TTTCAACACTTGAAAAAAAATCATACCTTCCTCAACATAACCCCAAAAACAAAAATCAACTGTTAAACTAAAGGCTTGGCTCCTCTGGTATGTTT
GAGTATTTTCACCAGTTAACCATTTCTCCAGTAGTTTATAATGTTCACTTCTTCCGGGAACTACAAAATTTCTCTTTCCCCTACCAAAAAACTCA
CCTATGTCGAGGGGCTCAACCATCCTTCGGAAGTTTGTTGCAGCATAAAGCAAACGCTTTCGGCGAGTTCTCCCCTCCTTCCAGGGCAAATTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390456] SGN-U562910 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191782 [Download][View] Facility Assigned ID: FA0AAD28AA01FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.941 Expected Error Rate: 0.0235 Quality Trim Threshold: 14.5