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EST details — SGN-E390606

Search information 
Request: 390606Match: SGN-E390606
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185360Clone name: TUS-47-C22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185360 is on microarray TOM1 spot ID 1-1-3.3.9.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C69895 [cLER-12-O4] Trace: SGN-T94379 EST: SGN-E283412 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390606Length: 678 bp (834 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E390606 [] (trimmed) CATCATTGATTTAAGCAAAAACAGAAACTTCAACAAAATTAAATGTCACTAATGAACTGAAACGGACTGATATAAATTCTCTTTAGCTAAAATAG
CAATACCAGACAAAATGAGTGAAAAATCAATCGATTTTCTGCATGATATCCTCAGAAGTGAACTTAGTGCCCTTGTCCTTGTCAGCAGCAGCTCG
TCCCTTAGCCTTGCGGTCGAGTAGTGATCTCCTGTCTTTGTCAAGCCTTAGCTTTGTAACAACAACCTTCGAAGGATGAATACCAACGTTCACAG
TAGATCCATTGACCTTCTCTCTGGTTATACGTTCAATGTGGATCACCCATTTCTTACGGTACACTTGGACAACTTTCCCGTCACGGCCCTTGTAA
GTTCCACGAACAACCTGAACTTCGTCATCTTTCCTCACCGGCATAGATCTTACGTTGTACTTTACACGTAACTCGGACGATAAGGGTGCGCTCAT
TAAAATCCGGCGCGCACTTGAAGGCGCCGTGAAATGAGCCTTCCTGCTCTTCCGGCGAGAGGAGGATACTCTTGGATTGTACTTCATATTTTGCT
GCTTCCTCTGTCGGTCCGACGAGCAATTGCTCAGCGAAATTGAGTACCTATTGAAAAATGGATGGGTTCCTTGCTTGGAATTCGAGACTGAGCAC
GGATTTGTGTACC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390606] SGN-U579485 Tomato 200607 Build 2 53 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191932 [Download][View] Facility Assigned ID: FA0AAD35BB11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.983 Expected Error Rate: 0.0017 Quality Trim Threshold: 14.5