EST details — SGN-E390629
Search information |
Request: 390629 | Match: SGN-E390629 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C185500 | Clone name: TUS-47-I18 |
| ||
Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185500 is on microarray TOM1 spot ID 1-1-7.1.9.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C79330 [cLES-8-J14] | Trace: SGN-T99117 | EST: SGN-E288597 | Direction: 5' | Facility: TIGR |
Clone: SGN-C185500 [TUS-47-I18] | Trace: SGN-T192192 | EST: SGN-E390866 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E390629 | Length: 434 bp (857 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E390629 [] (trimmed)
CAGGTGCAATCTCGTGTCAACCTAAGTAGCAGAAAAATGGCTCCAATCGCCGTTGGTGACGTCATCCCCGATGGTACCGTATCTTACTTCGACGA
GCAAGATCAGATGCAGACCGTCTCAGTATACTCACTTGCTAAGGGCAAGAAGGTCATCATCTTCGCCGTTCCCGGAGCTTTCACTCCCACTTGCA
GCATGAAGCATGTGCCTGGCTTTATTGAAAAGGCTGCTGAGTTGAAGTCAAAGGGTGTCGATGAAATCCTCTGCATCAGTGTCAATGACCCCTTT
GTGATGAAGGCCTGGGCAAAAACTTACCCTGAGAACAAACATGTAAAATTTCTTGCTGATGGAGCTGGAAAATACACCCATGCCCTTGGGCTGGA
GCTTGATCTGTCGGATAAGGGGCTTGGTGTTGGGGGGGGGAAGGTATGCTCTTT
GCAAGATCAGATGCAGACCGTCTCAGTATACTCACTTGCTAAGGGCAAGAAGGTCATCATCTTCGCCGTTCCCGGAGCTTTCACTCCCACTTGCA
GCATGAAGCATGTGCCTGGCTTTATTGAAAAGGCTGCTGAGTTGAAGTCAAAGGGTGTCGATGAAATCCTCTGCATCAGTGTCAATGACCCCTTT
GTGATGAAGGCCTGGGCAAAAACTTACCCTGAGAACAAACATGTAAAATTTCTTGCTGATGGAGCTGGAAAATACACCCATGCCCTTGGGCTGGA
GCTTGATCTGTCGGATAAGGGGCTTGGTGTTGGGGGGGGGAAGGTATGCTCTTT
Unigenes |
Current Unigene builds | |||||
[SGN-E390629] | SGN-U579086 | Tomato 200607 | Build 2 | 92 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T191955 [Download][View] | Facility Assigned ID: FA0AAD35BE09RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.982 | Expected Error Rate: 0.0029 | Quality Trim Threshold: 14.5 |