Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E390675

Search information 
Request: 390675Match: SGN-E390675
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185042Clone name: TUS-46-F16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185042 is on microarray TOM1 spot ID 1-1-1.2.12.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C85978 [cLET-41-J6] Trace: SGN-T110445 EST: SGN-E298408 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390675Length: 544 bp (873 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E390675 [] (trimmed) TTGATGGCAACTAATCATAGTACCATACATTAACACTACCTTTCTTGCCCAAAAAAAGTGTTGTTACGAGACTTAAATCCATACCAAATGTTGGT
GAATCTCTCTTTGGTCTTAAAAGTGGTAGAAGTGGAAGGATTACTTGCATGGCTACATACAAAGTGAATCTTATTACACCAGAAGGACCTTTTGA
ATTTGATTGTCCTGATGATGTCAGCATTCTTGATCGGGCGGAGGAAACGGGGCTAGATCTTCCTTATTCATGTAGGGCTGGTGCTTGCTCATCTT
GTGCTGGAAAGGTTACTGCTGGAAGTGATGATCAGTCTGATAACAGTTTTCTTGATGATGACCAAATAGATGAAGGATTTGTGCTCACTTGTGTT
GCTTATCCAAAGTCTAATGTTACCATTCAAACTCACAATGAGGACGACCTTGTTGGCTAACTAGTATTTTACTTCTTTTCTTATCAATAATTAAA
TTAAGTGCTATGTACCTCTTTTATATAAGTCAATGATGACTTGTACCATACTGATTTATGGAAGAATTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390675] SGN-U579122 Tomato 200607 Build 2 70 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192001 [Download][View] Facility Assigned ID: FA0AAD34DC08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.955 Expected Error Rate: 0.0182 Quality Trim Threshold: 12.5