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EST details — SGN-E390972

Search information 
Request: 390972Match: SGN-E390972
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185349Clone name: TUS-47-C11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185349 is on microarray TOM1 spot ID 1-1-6.3.9.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C69618 [cLER-12-B16] Trace: SGN-T94431 EST: SGN-E283464 Direction: 5' Facility: TIGR
Clone: SGN-C185349 [TUS-47-C11] Trace: SGN-T192055 EST: SGN-E390729 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390972Length: 653 bp (881 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390972 [] (trimmed) AATATAATCAATCGTCAAATTTCGAAACAAGACTCGAGTACATACGATTTTAAACGAAACACAGAAAAAAGAGAAAGTGACAACTGATACAACAT
AGAAAGAAAGGATCCATAAGCAAGATCAATGCTATCTATCTTATTCTTAATTCTCCTCATGAAACCAAATTCTGATGATCAGCTTTACTGAACTT
TAGAGCAGTCAGTAGAGGGGCTGATCTTGTAAGGGATGTTGACACTACAAGTGTTAGGGAGAGCAGCAGCTTTGCCCAAATTGAGTCCTGTAAAA
GAAGAAGCAGCTGATTTTAGGCAAGTGCATGCGGCCTGTCGGTCTACTGTAGTCTTGGCTTGACCCAAAAGACCCTTAACACCATCACAACAGTT
TCTGAGAGGACCGCGGTTCATTAGATAAGGGAGACAAGGAGCCAAGGTAGATGTAACTTGACCACAAGTTAAAGCCTCTGCATGGGGTGCAACCA
CTACCATGCATAAAAGCACAAAGCATGCAATCTTGTTAACCATTTCCATTCTTAATGATTTATGAAAATTAGAATAGTAATTATGAGTTTTTTTT
CAGAAATATAACAACGAGTGCTCTTCCATATTTGATTCATACATACATAATACATACAAACAACATACACACATTTGATTTTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390972] SGN-U581465 Tomato 200607 Build 2 445 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192298 [Download][View] Facility Assigned ID: FA0AAD35AB06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.953 Expected Error Rate: 0.0092 Quality Trim Threshold: 14.5