EST details — SGN-E392128

Search information 
Request: 392128Match: SGN-E392128
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176646Clone name: TUS-24-H20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176646 is on microarray TOM1 spot ID 1-1-5.4.9.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27181 [cLEF-42-M23] Trace: SGN-T60734 EST: SGN-E247690 Direction: 5' Facility: TIGR
Clone: SGN-C176646 [TUS-24-H20] Trace: SGN-T193453 EST: SGN-E392127 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E392128Length: 609 bp (892 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E392128 [] (trimmed) TCCTCCTCTTAAAAATTCACTCTCCCTCACTCTCAAACACTATACGCCCTTAGCCGGAAACGTTGCTTGTCCACTAGATACAAACGGATATCCTG
AGTTACGTTATGTGACAGGAGATTCTGTGTCTGTTACTTTTTTCGAGACTGATATGAATTTCAATTATCTCATTGGTGACCATCCGCGTAAGGCT
AAGGATTTTTATCACTTTGTTCCTAAGTTAGGGGAACCTAAGGATGCACCGGGGGTCCAACTAGCCCCGCTCTTAGCCATTCAGGTGACACTTTT
TCCGAATCTTGGTGTATCCATTGGTTTCACTAACCATCATGTTGTTGGTGATGGAGCTACTATAGCAGGGTTCATTAAGGCGTGGGCTCTACTCC
ACAAATTCGGTGGACATGAACAATTCTTATCGAATGAGCTAATTCCATTTTATGATAGGTCCGTAGTAAAAGACCCATATGGACAAGGGATGTCC
ATCTGGGAAGAAATGAAAAGCAAGAATCTAGATATGCGTGACGTTATGACTCCTCCTCCTGAACACAAGGTTCGAGGTACATTTACTATTANAAG
AGATGAAATAGAGAAACTGAAGAATTTTATATTGAACTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392128] SGN-U571458 Tomato 200607 Build 2 25 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193454 [Download][View] Facility Assigned ID: FA0AAD12DD10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.984 Expected Error Rate: 0.0108 Quality Trim Threshold: 14.5