EST details — SGN-E392379

Search information 
Request: 392379Match: SGN-E392379
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180958Clone name: TUS-35-L12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180958 is on microarray TOM1 spot ID 1-1-5.4.17.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C1721 [cLEC-13-K9] Trace: SGN-T25917 EST: SGN-E204164 Direction: 5' Facility: TIGR
Clone: SGN-C180958 [TUS-35-L12] Trace: SGN-T193706 EST: SGN-E392380 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E392379Length: 572 bp (866 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392379 [] (trimmed) GAAATAGAAGATTATGCTTTGAAGGGCAAAGTAGATTACTATTAAAAGCATTTAAGAATTCTTTTGAGATGTGTCACAATAGAATGAAATAGAAC
ACTCAAAAGCTAAGGCAAAATCTAATATCAGAACACTGGAAAGTAAGTTCAACAAAACCTTCAGGAAGTATGGCCCTCCTCAGCCGCAGCTTCAA
AAGTTTCACCAGCCACAAGTTCTGGTACATCATCATCATCTTCCTGTGCTGCAACAGCACCTGCAGCCACATCTGCAGCACCAGGTGCCTGCTTC
TGGAACTGCTCAGCCAACTTCTTCAAGTTCTCCAAATTATCAGGACCCAGCTGGTGAATAATTTGAGGAAGAATATCCTGCAATTTCTTTGTCTG
GGGGGTACCACTGACTACCCATGTGTTTGCAGCAATTGATGCTTGAACTTTGGGGTTACTGAATTGGATAACAACATCCTCTTTGAAAATGTTGA
CTTCTTCAATGGCAGGAATGGCATTGACACCTATTCTTTTCAAGGTGCTCTGTAGTCTTTTGTCATCAATTGTATTTGTTTTGTGTACGGCTTTC
TT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392379] SGN-U567984 Tomato 200607 Build 2 36 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193705 [Download][View] Facility Assigned ID: FA0AAD23DF06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.958 Expected Error Rate: 0.0024 Quality Trim Threshold: 12.5