EST details — SGN-E392424

Search information 
Request: 392424Match: SGN-E392424
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180316Clone name: TUS-34-A18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180316 is on microarray TOM1 spot ID 1-1-7.1.19.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C28315 [cLEF-47-E20] Trace: SGN-T62041 EST: SGN-E248012 Direction: 5' Facility: TIGR
Clone: SGN-C180316 [TUS-34-A18] Trace: SGN-T199211 EST: SGN-E397885 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E392424Length: 667 bp (841 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E392424 [] (trimmed) ATCATGAGCCCTTGTGGATATGAAGCTACTGTTTGCTGGCTTGAGATGATTATATGCAACTTAATTTTTAGAAGAAAAGTTTTGTATCCTGGCAA
TTGCTCGAGATTCTAATTTTTTTATGCTACAGGGAGCTTCTGGTGTTGCCGCAAGCACATAATGGCGTCCAAGTATCATGGACCAATCAACAGAA
CACGGCGACCGATCTCTATATTAATTGTAATTGGTCTTTGTTGTTTCTGTTATCTAATAGGAATTTGGCAGAAAAGTGGATCCGGAAAGGGAGAT
AAATTAGCACTACAAGTGACTGAGCAAACTGCTGACTGCAATGTTTTTCCACAAACCACTCTGGATTTTGAGTCACACCATAATTATGTGGAAAC
GGTTGAAACTTCAGAACTAACAGTTAAAAGATTCAAATCATGTGAAGCTAAATACACTGACTATACTCCCTGCCATGAACAAGACCGAGCTATGA
AATTCCCAAGGGAAGATATGATATATAGAGAAAGGCATTGCCCTCCAGATGATGNAAAGCTTCGTTGTCTGATTCTAGCACCCAAAGGATACACA
ACTCCATTTCCATGGCCCAAAAGCCGTGATTATGCCTACTATGCTAATGTCCCTTACAAACACCTGACAGTTGAGAAGGCAGTCCAAAAACTGGG
TG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392424] SGN-U583160 Tomato 200607 Build 2 95 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193750 [Download][View] Facility Assigned ID: FA0AAD22BA09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.976 Expected Error Rate: 0.0089 Quality Trim Threshold: 14.5