EST details — SGN-E392542

Search information 
Request: 392542Match: SGN-E392542
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180834Clone name: TUS-35-G8
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180834 is on microarray TOM1 spot ID 1-1-1.3.17.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C63942 [cLEM-4-F14] Trace: SGN-T84344 EST: SGN-E268926 Direction: 5' Facility: TIGR
Clone: SGN-C180834 [TUS-35-G8] Trace: SGN-T193624 EST: SGN-E392298 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E392542Length: 579 bp (868 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392542 [] (trimmed) ACCTAAATAATATCATCAAGTTTCTTTTCTAGACGACTGAGCATTTAGGACCTTAGACTGGTCTCGTATAAGTTCACCGCGATTCATAATAGCAA
ACAGTAGTCTGAAGGATGCAAAACTAGCAGTTCCAAGTTCCGAAGTTGCATTACCCTAACCTAAAAGTAGACTAAAGGAATAAGAACTAGAACAT
TTGTCGTCTCCACCTGCAGATCGGTCATTCTTCTCTCGTCCCTGCAAATGCCTGTGAAATCAAACCTGTTGGTATATATCCTCTGATTTGGCTCC
ACAACCTGGATGAGCTCTGGTCATAAGAAACCTGACTGCACAAACAAGCACACAATGCATTTGCAAAAGATTATACAAGTAAACATCATGCAAGT
CTCTTATTACAAAGCCCTTAAAATGCAAGACCTAAACCTAGATCCCGAAAAAGGACATTTCAGCCTGGATAAGGGGGGGGAGGAAATGGATGACC
AAGAAATGTTATGACAAGCTAAGTTTATTATCTCTTTTTATAATCCAATCCTAGCTGAACAATTATGGAATAGTTAATGCAGTGGAAAACCCTGT
AACAAAAAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392542] SGN-U577622 Tomato 200607 Build 2 8 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193868 [Download][View] Facility Assigned ID: FA0AAD23BD04FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0089 Quality Trim Threshold: 14.5