EST details — SGN-E392543

Search information 
Request: 392543Match: SGN-E392543
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180838Clone name: TUS-35-G12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180838 is on microarray TOM1 spot ID 1-1-5.3.17.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C64005 [cLEM-4-L14] Trace: SGN-T84356 EST: SGN-E268938 Direction: 5' Facility: TIGR
Clone: SGN-C180838 [TUS-35-G12] Trace: SGN-T193626 EST: SGN-E392300 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E392543Length: 724 bp (855 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392543 [] (trimmed) ATAACAGTTTTATTATTCAAGACAGATTTTTCCACAACCTTAGAGCAAATTGATCCAGAGTTTTCAATCGAACAAACATTTGAAACGAAGAAATA
TCAGAATTGAATGGGAGATCGATCACATGTACAAGCACAGAAGAGGAAAAACCATAATAATGCATTAAACGAGATATGAAAACAAAGTCGAAACA
TCCAGGGATTTCCTTACAAATAACTATCTGCTTTTGGAGTTGCTTTTATGAAGACATGTCCTGGCGTTGGGTCCTTTTCCTAAGCACAGGCTGCA
GCTATAAGTTCTCTTTACTCGAGTCTTGATTGTTGCAACCACTTTAGTGGCGAATTCATTCTTTTGGTGGCATGTTCTTCTGTTATGGCCACTTC
TTTGACACTTGCTGCAATGATGATTAACCTTAACTGTCTTTTTCGGTACAATTAAGCTCAACTTTAAGCAAGTTCTTCTGTTATGACCCTTTGTT
CCACATAATCCACATCTATAATGTCTATCCGTATTGTCTCGAATTTCTGGACAGTAGTTACTCCTATGTCCTTCCTGTCCACAATTTCTACAGTA
AAATTTCACCCCTTTCATGGATATGCTTCTCTTGCGGCGGTTATCTGGATCACGGAAGTAACTTTTCATGGATTCTGAGGCACGTTTCCTAGCGG
CAGGTGTCCCCTTTGCTTTCTTAATAGCAGCTACTCTTTGTGCATGAAGCATCGGATCG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392543] SGN-U570899 Tomato 200607 Build 2 3 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193869 [Download][View] Facility Assigned ID: FA0AAD23BD06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.962 Expected Error Rate: 0.0106 Quality Trim Threshold: 14.5